Antibody News

Slicing and Dicing RNA with Dicer

Wednesday, March 12, 2014 - 11:33

Dicer is an RNaseIII-like enzyme capable of cleaving double-stranded RNA (dsRNA) into smaller 21-23 nt RNA fragments known as short interfering RNA (siRNAs). It targets the selective degradation of complementary RNAs in a posttranscriptional gene silencing (PTGS) manner and is key for cell differentiation and development. Unlike long-dsRNA-dependent PTGS which is limited to certain cell types, siRNA can act in a wide variety of cells. Mutations in Dicer are found in blastoma, breast cancer, adenocarcinoma, and pancreatitis. Dicer also appears to be involved in myelination and nervous system protection, as well as miRNA-induced pathologies found in vision and hearing sensory cells and cardiovascular diseases. The Dicer antibody allowed Doi’s group to determine that Dicer and eIF2 family transcription factors mediate PTGS synergistically...

Caspase 9: The Suicidal Cell Whisperer

Monday, March 10, 2014 - 10:19

Cell death via apoptosis is a key cellular function triggered by the cell death receptor family and their ligands which signal through downstream adaptor molecules and the caspase protease family. Among the subclass of initiator caspases that include subtypes -2, -8 and -9, caspase 9 is expressed in a variety of human tissues. It is a key component in cell death in response to a wide range of activators such as TNFalpha, TRAIL, anti-CD95, FADD, TRADD, granzyme B, and CPP32.  Activated caspase 9 primary signaling occurs through caspase 3, which it cleaves and activates. The Caspase 9 antibody was used by Krajewski’s group to characterize...

Exploring Various Studies on TLR6 Expression

Thursday, March 6, 2014 - 15:10

The protein TLR6 is one member of the large Toll-like receptor (TLR) family, which governs the activation of the innate immunity system and pathogen recognition in cells. The TLR family is highly conserved from Drosophila to humans, and all the family members have a high degree of both functional and structural homology. TLRs modulate cytokine production by cells that is required to effectively establish innate immunity.  Interesting mesenchymal stem cell (MSC) differentiation studies in van den Berk’s lab with the TLR6 antibody, demonstrated that the expression patterns of TLRs and ligand-induced signaling and outcome vary between MSCs derived from primitive, unrestricted lineage cord blood compared to those from bone marrow1.  Harman et al used the TLR6 antibody to perform analogous lineage gene expression profiles in sorted human blood and skin...

TRAIL-R2: The Trail Less Traveled

Wednesday, March 5, 2014 - 14:06

Cells undergo apoptotic programmed cell death in response to various stimuli, and this key mechanism is necessary for cellular morphogenesis, tissue homeostasis, and host defense. Particular cytokines such as tumor necrosis factor (TNF) and the Fas ligand signal through their cooperative death domain-containing receptors tumor necrosis factor receptor 1 (TNFR1) and Fas. Like its cousin TRAIL-R1, TRAIL-R2 is widely expressed in both normal tissues as well as in many types of tumor cells. TRAIL-R2 mediates apoptosis and NF-kB activation in a variety of cells and tissues just the rest of its family receptor proteins TNFR1, Fas, and death receptor 3  (DR3). The TRAIL-R2 antibody was employed by Kim’s group in their characterizations of apoptotic signaling in TRAIL-resistant cancer cell lines – they found that...

CD133

Monday, March 3, 2014 - 15:18

Also known as PROM1 and AC133, this gene is located on chromosome 4p15 and encodes CD133, a 120kDa pentaspan transmembrane glycoprotein (5-TM) and presents multiple spliced variants. Prominin-1 (CD133) was the first protein identified as "Prominin"; originated from the Latin word "Prominere" meaning to protrude and was initially detected on CD34 bright hematopoietic stem cells using a monoclonal antibody (mAb) raised against human CD34+cells. This antibody detected the AC133 epitope of CD133 and since the expression of this epitope was restricted to CD34+ progenitors in bone marrow, adult blood and fetal liver cells, CD133 was proposed as the marker for progenitor hematopoietic cells. [1,2] Subsequently Florek et al, demonstrated the expression of CD133 in several adult human tissues, such as kidney proximal tubules and the parietal layer of Bowman's capsule of...

Androgen Receptor: What Makes a Man?

Thursday, February 27, 2014 - 13:03

Steroid receptors (SRs) are a superfamily of ligand-dependent nuclear transcription factors that activate responsive genes response to hormone. Androgen receptors (ARs) are found in a wide variety of tissues, including reproductive organs, central nervous system (CNS), and skeletal muscle. AR signaling is fundamental for the development and function of male reproductive organs, but also plays a role in non-reproductive organs such as muscle, hair follicles, and brain. Abnormalities in AR signaling are linked to a number of diseases, including prostate cancer, male infertility, and Kennedy's disease. In immunohistochemical characterization studies on androgen receptor localization by Takeda’s group, the AR antibody was used to comprehensively survey subcellular AR distribution in rat, human, and mouse tissues1.

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CD4, HIV and T Cell Signaling

Wednesday, February 26, 2014 - 13:19

CD4, also known as Cluster of Differentiation 4, interacts with major histocompatibility complex class II antigens, acts as a receptor for the human immunodeficiency virus and induces the aggregation of lipid rafts. It is expressed in T lymphocytes, B cells, macrophages, granulocytes, dendritic cells and specific regions of the brain. This protein initiates the early phase of T-cell activation and may function as an important mediator of indirect neuronal damage in infectious and immune-mediated diseases of the central nervous system.

CD4 has been associated with CD4 deficiency, penicilliosis, dermatophytosis, anogenital venereal wart, anus cancer and over 100 other diseases and disorders.  Among its related super-pathways are T cell receptor signaling pathway...

CD68: A Marker of Macrophages and Monocytes with Implications for Clinical Diagnosis

Monday, February 24, 2014 - 15:51

The CD (Cluster of Differentiation) nomenclature was established in 1982 at the First International Workshop on Human Leukocyte Differentiation Antigens. It was intended for the classification of leukocytes according to the specific epitopes found at the cell surface, and at this inaugural meeting 139 monoclonal antibodies were evaluated. These antibodies had been used by various researchers to perform immunofluorescent cell staining, and were grouped into clusters based on similar reactivity to specific cell types (1).  Eleven clusters were designated at this meeting, however to date more than 350 CD molecules are currently known, and this number continues to grow.

Antibodies grouped together at the Third International Workshop on Human Leukocyte Differentiation Antigens included the clones Y2/131, EBM11, Ki-M6 and Ki-M7, all of which were found to immunoprecipitate a protein of 110kDa from tissue sections. Another antibody,...

Pulling RANK: Immune Response and Osteoclast Activation by RANKL

Friday, February 21, 2014 - 11:00

RANKL is the ligand for the receptor activator of NFkB (RANK) that belongs to the tumor necrosis factor receptor (TNFR) superfamily. RANK overexpression induces the NFkB and c-Jun-terminal kinase (JNK) downstream pathways. This pathway has been studied in detail in the bone remodeling system with regards to osteoclast activity and induction. The RANK antibody was used to characterize the expression and localization patterns of RANK in polymorphonuclear neutrophils (PMNs) upon inflammation (1).  Additionally, RANKL antibody was employed in bone remodeling studies on a mouse osteoblast model to investigate the role of osteoclast differentiation factor (ODF) in lipopolysaccharide (LPS)-mediated bone diseases such as periodontitis (2). Those researchers used RANKL antibody to demonstrate that LPS directly induces ODF mRNA via...

Kif2a and MT-Destabilization during Mitosis

Thursday, February 20, 2014 - 16:18

Kif2a belongs to the Kinesin-13 microtubule depolymerase family that includes members Kif2a, Kif2b, and Kif2c. These proteins are capable of depolymerizing microtubules (MTs) at their ends. During mitotic cell division, Kif2a specifically localizes to centrosomes and is essential for chromosome organization at the metaphase plate, spindle dynamics and turnover, and bipolar mitotic spindle formation. From prophase to metaphase, Kif2a is recruited to the spindle microtubule and spindle poles through interactions with the protein PSRC1, and this requires Polo-like kinase (PLK1). Blocking of Kif2a function either through siRNA knockdown in human cancer cells or antibody blocking in Xenopus eggs leads to the...

NAK Shows a Knack for Inflammation Response

Wednesday, February 19, 2014 - 16:04

NFkB-activating kinase (NAK) is serine/threonine protein kinase that is a member of the IkB kinase (IKK) family and plays a key role in cellular inflammatory responses to foreign stimuli and agents. Fitzgerald, et al. used the NAK antibody to characterize the signaling pathways downstream of interferon regulatory factor 3 (IRF3) and NFkB in viral infection and the innate immune response – NAK and IkappaB kinase epsilon (IKKepsilon) were found to be integral components (1). Further IRF3 studies were done with the NAK antibody to generate expression profiles in cord blood cells treated with lipopolysaccharide (LPS) to induce interferon downstream...

RAD50 and DNA Damage Response

Monday, February 17, 2014 - 11:26

DNA repair protein RAD50 is a component of the MRN complex (Mre11-RAD50-Nbs1) responsible for DNA double strand break (DSB) repair. DSBs are caused by ionizing radiation, certain chemotherapy drugs, metabolic reactive oxygen species (ROS), replication errors, and programmed enzymatic activity during meiosis or V(D)J recombination.  If left unrepaired, DSBs generate extremely problematic chromosomal translocations, aneuploidy, and carcinogenesis. As a DSB sensor, RAD50 detects and signals the presence of DSBs. RAD50 is a co-activator for DSB-induced cell cycle checkpoint signaling, and operates as a repair-effector in two competing repair pathways: homologous recombination (HR) as well as...

Understanding DNA Recombination with Cre-Lox

Friday, February 14, 2014 - 13:06

Cyclization recombination enzyme (Cre) is a member of the extensive family of recombinases and recognizes a 34 bp sequence motif from PI bacteriophage referred to as LoxP. The Cre enzyme works to cleanly excise an intervening DNA fragment that is flanked by two LoxP sites. The LoxP sites must be present in the same orientation. The excised segment is later degraded to leave only a single LoxP site copy in the starting target molecule. As Cre was first developed in the late 1980's and heavily used to artificially manipulate gene expression in many systems, there are comprehensive reviews of the Cre/lox system in the literature (1). Additionally, because the Cre/Lox system is very compatible in terms of versatility, it can be applied to a wide variety of cell types, such that there are numerous stable bacterial, plant, and animal stocks containing a Cre gene copy controlled under an assortment of useful promoters - ubiquitous, tissue-specific, inducible...

Understanding OPA1 and Mitochondrial Function

Thursday, February 13, 2014 - 15:44

OPA1 belongs to the Dynamin large GTPase protein family. OPA1 exists as a single-pass membrane protein localized in the mitochondrial inner membrane and also as a soluble form in the mitochondrial intermembrane space. There, it is a key player in fusion of the inner mitochondrial membrane as well as maintenance of the cristae architecture. The oligomerization of differentially processed forms of OPA1 directs mitochondrial membrane formation. It is expressed in brain, retina, testis, heart, and skeletal muscle. In response to intrinsic apoptotic signals, OPA1 proteolytic processing may lead to disassembly of the oligomers, allowing release of caspase activator Cytochrome C into the intermembrane space. The OPA1 form S1 is its inactive form resulting by cleavage by the...

Controlling Epigenetic Signaling with Dnmt1 and Dnmt3b

Wednesday, February 12, 2014 - 13:27

Dnmt1 belongs to the C5-methyltransferase family that repairs cytosines in dsDNA using a nucleophilic attack mechanism. Dnmt1 is the most abundant mammalian DNA methyltransferase. It is the key methylation maintenance enzyme for both DNA replication/repair and de novo methylation during somatic cell development and differentiation. It primarily acts upon CpG residues, with a preference for hemimethylated residues, but is capable of methylating unmethylated DNA more than other Dnmt enzymes. In cell division, it is essential for epigenetic inheritance because it associates with S-phase DNA replication sites to maintain the methylation pattern in newly synthesized strand. To maintain DNA methylation independently of replication, Dnmt1 routinely cycles through different states of complex formation and localization. It...

c-Myc. See Myc Run Transcription Regulation

Monday, February 10, 2014 - 15:09

Myc genes (L-Myc, N-Myc and C-Myc) are a family of transcription factors. c-Myc is involved in transcription regulation, apoptosis and cell growth. Mutations in c-Myc have been tied to several cancers.

 

Free sample bonus: Get a free sample on select c-Myc antibodies during the month of February! Get your c-Myc antibody free sample now.

 

c-Myc Infographic

Download the c-Myc infographic 

 

Novus Biologicals offers c-Myc...

Winter Protein Games

Friday, February 7, 2014 - 11:42

Get into the Winter Protein Games 2014! Check out the contenders competing including SKI, POLE, ICEBURG, SKT, TRAIL, WIN and BOB1. Learn more about each protein's function, gene name, molecular weight and family.

View all the fun and games happening in our Winter Protein Games Infographic below.

Winter Protein Games

Novus Biologicals offers reagents for each target:

1. SKI

2. POLE

3. ICEBERG

4. SKT

5. TRAIL

6. WIN

7. BOB1

...

ATM and DSB Repair in Cancer

Thursday, February 6, 2014 - 12:52

Ataxia Telangiectasia Mutated (ATM) is a serine/threonine protein kinase that is the master regulator of the DNA double-strand break (DSB) repair pathway. ATM is a key part of the cell cycle machinery that activates checkpoint signaling in response to DSBs, apoptosis, and genotoxic insults. ATM normally exists in its inactive state as a dimer or tetramer - upon DNA damage, it dissociates into monomers triggered by its own autophosphorylation. This activated state binds and acts upon a large variety of different signaling molecules ranging from ABL1, p53, BRCA1, and RAD9. Not surprisingly, given the wide range of binding partners, ATM has a varied host of functions including vesicle and protein transport, T-cell development, cell...

Understanding Noxa Regulation of Apoptosis

Wednesday, February 5, 2014 - 10:45

Noxa is a pro-apoptotic gene belonging to the Bcl2 protein family that is unique in that it contains only BH3 domain. The BH3-only subclass of proteins, including proteins like PUMA and Bim in addition to Noxa, regulate the remaining Bcl-2 family members. Due to the key roles these proteins play in this critical pathway, BH3-only proteins have great promise as therapeutic targets for cancers such as leukemias, as well as autoimmune diseases, as discussed in extensive reviews by Zhang, et al. and Cottier, et al. (1,2).

MTH1: Effects on DNA Damage Repair, Cancer and Neurodegeneration

Monday, February 3, 2014 - 16:01

MTH1 (human MutT Homolog 1) is a purine nucleoside triphosphatase enzyme and belongs to the Nudix hydrolase family. In mammalian systems, MTH is a major detoxifier of the oxidized DNA precursors, 8-oxo-dGTP, 8-oxo-dATP, and 2-OH-dATP and prevents the misincorporation of these purine nucleoside triphosphates into DNA and the subsequent occurrence of A:T pairs to C:G and G:C to T:A pair transversions. The MTH enzyme can also hydrolyze the corresponding ribonucleotides, 8-oxo-GTP, 8-oxo-ATP, and 2-OH-ATP. It is antimutagenic and suppresses cell dysfunction and/or death induced by oxidative stress, and MTH1 deficiency increases cells’ susceptibility to oxidative damage-mediated dysfunction. The MTH1 enzyme is found mostly in the cytoplasm, but also in the nucleus and mitochondria, with highest expression levels in tissue types such as the thymus, testis, and embryo. In the types of...

Regulating Immune Response Pathways with IKK beta

Wednesday, January 29, 2014 - 14:52

IKK beta, also known as IKK2, activates the NFkB complex by phosphorylating the NFkB inhibitor, IkBa. Several transcript variants, some protein-coding and some not, have been found for IKKB. The Nuclear Factor-kappa B (NF-kB) family of transcription factors regulates the expression of a wide range of genes critical for immune and inflammatory responses, cell survival, immune development, and cell proliferation (1). NF-kB was firstly identified by Dr. Ranjan Sen in the lab of Nobel Prize laureate David Baltimore as a regulator of kB light chain expression in mature B and plasma cells (2). Years of research following this discovery demonstrated that NF-kB is expressed in almost all cell types and tissues, and specific NF-kB binding sites are present in the promoters/enhancers of a large number of genes.

The NF-kB family contains five structurally related members named p50 and p52 (...

Cytochrome C in Apoptosis, Immune Response and Cancer

Monday, January 27, 2014 - 12:22

Cytochrome C is an electron carrier protein that localizes in mitochondrion intermembrane space and has been identified as one of the key signaling molecules of apoptosis or programmed cell death. Suppression of the anti-apoptotic members or activation of the pro-apoptotic members of the Bcl2 family leads to altered mitochondrial membrane permeability resulting in release of cytochrome c into the cytosol. Binding of cytochrome C to Apaf1 triggers the activation of Caspase 9, which then accelerates apoptosis by activating other caspases.

This protein has been involved in the following super pathways: TWEAK Pathway; Respiratory electron transport, ATP synthesis by chemiosmotic coupling, and heat production by uncoupling proteins; Apoptosis...

IKK alpha: Roles in Development, B-cell Survival and ESC Differentiation

Friday, January 24, 2014 - 13:54

Inhibitor of nuclear factor kappa-B kinase subunit alpha (IKK1 alpha) is a serine/threonine kinase that forms a complex with IKK beta and NEMO. It plays an essential role in embryonic skin development. Mice with low levels of IKKa show an increase in squamous cell carcinoma and overexpression of IKK-α in the skin of these mice abrogates tumor formation (1).

IKK-alpha has also been shown to play a role in B-cell maturation and survival.  BAFF is a soluble signal molecule that is required for B-cell survival and signals through an IKK-α regulated NFkB pathway.  Deletion of IKK-a during B-cell development inhibits B-cell maturation and BAFF-dependent survival but deletion IKK-α in mature B-cells shows no effect.  This study indicates that IKK-α plays an important role in B-cell development and survival (2).

...

The MRE11 Complex and DNA Damage Response

Thursday, January 23, 2014 - 11:19

The maintenance of genome stability depends on the DNA damage response (DDR) which is a complex signaling network including cell cycle checkpoints, DNA repair and damage tolerance pathways. The DDR complex has the ability to sense DNA damage and transduce this information to the cell to influence cellular response to it. Failure of the DDR or associated events causes genomic instability, an underlining cause of several human syndromes and also associated with various age-related diseases, particularly cancer. The DDR pathway is initiated upon recognition of the DNA lesion by sensor proteins, followed by rapid and, in many cases, reversible changes in cell behavior. The DDR can also trigger specialized programs, such as...

DNMT3B: Roles in Leukemia

Wednesday, January 22, 2014 - 12:55

DNA-methyltransferase 3B (DNMT3B), also known as DNA methyltransferase HsaIIIB, is a member of the class I-like SAM-binding methyltransferase superfamily and C5-methyltransferase family. DNMT3B plays an essential role in the establishment of DNA methylation patterns during development and is vital for genome-wide de novo methylation.

DNMT3B has been linked to two distinct types of leukemia in recent studies: acute myeloid leukemia (AML) and juvenile myelomonocytic leukemia (JMML).  In AML, myeloid blood cells become cancerous and cause rapid production of abnormal while blood cells in the bone marrow, which in turn, affects production of regular blood cells (1).  A mutation of the DNMT3B gene is frequently found in patients with AML (2).  Studies have found a correlation between overexpression of DNMT3B and...

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