Antibody News

A good helper on validating your FLOW and IHC data - Rabbit IgG Isotype Control

Monday, April 28, 2014 - 14:31

Isotype controls are primarily used as negative controls in flow cytometry but they can also be used for immunohistochemistry. They are used to approximate the non-specific target primary antibody binding due to protein-protein interactions, binding to Fc receptors on target cells, non-specific protein-protein interactions, and cell autofluorescence. In order to most accurately decrease the non-specific background signal, the isotype control used should be selected to match as closely as possible to the primary antibody with respect to species, isotype (heavy and light chains), and conjugation type. Isotype controls are available for almost all immunoglobulin subclasses. The Rabbit IgG isotype control antibody has been raised against normal rabbit IgG isolated using fractionation and DEAE chromatography. Rabbit IgG isotype control antibody was used by Pallet et al in...

World DNA Day Infographic

Friday, April 25, 2014 - 10:58

World DNA Day celebrates the anniversary of the discovery of the double helix and publication of the findings by Watson, Crick, Wilkins and Franklin as well as the completion of the Human Genome Project in 2003. Congress officially declared April 25th as DNA day to commemorate both scientific achievements. Learn more about DNA in our infographic below.

World DNA Day Infographic

Resources

  1. Science Centres 
  2. DNAFTB.org 
  3. ...

The Darwin Initiative wins votes, but will it be effective and unbiased?

Thursday, April 24, 2014 - 15:53

"Your Darwin Initiative would be huge! Both in scope and impact. [it's] possibly the best way to ensure satisfaction when choosing/selecting an antibody," respondent, Novus 2014 Antibody Quality Survey.

As part of Novus's ongoing commitment to our customers we recently started a survey program to better understand the challenges faced by researchers using antibodies. Our first survey explored antibody quality—what researchers expect, what researchers would like, and what problems researchers currently face in their antibody experiments (if you haven’t filled out the survey yet, click here , or download the report on the results-to-date from here). As part of the survey, we asked survey respondents to evaluate a few hypothetical antibody quality programs that we're thinking of adopting.

Out of the four proposed programs, the most...

A versatile member from the WNT protein family

Thursday, April 24, 2014 - 15:43

The Wnt gene family is made up of structurally related genes encoding secreted signaling proteins. These proteins have been implicated in oncogenesis and developmental processes, such as cell fate regulation and embryogenesis patterning. There is high evolutionary conservation among species for the Wnt5A protein. Rao’s group from China used the Wnt5A antibody in their immunohistochemical expression survey on a wide variety of renal epithelial neoplasms in hopes of determining if Wnt5A is a useful immunohistochemical marker that allows a definitive differential diagnosis between renal oncocytomas and other subtypes within the spectrum of renal cell carcinomas (RCCs)1. Some interesting neuroscience studies detailing synaptic plasticity and chronic pain were performed with the Wnt5A antibody in HIV patients2.

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FLICE, FLICE, baby

Wednesday, April 23, 2014 - 15:58

Cell death via apoptosis is a fundamental cellular function triggered by the cell death receptor family and their ligands which signal through downstream adaptor molecules and the caspase protease family. All caspases exist in a precursor form composed of a prodomain, and large and small catalytic subunits. Caspases require a cleavage adjacent to an aspartate to liberate one large and one small subunit, which can then associate into an a2b2 tetramer. These active caspase forms are triggered by stimuli such as ligand-receptor interactions, growth factor deprivation, and cellular function inhibitors. Caspase 8 (FLICE) directly links CD95 (Fas receptor) activation into the caspase pathway, with caspase 8 overexpression inducing apoptosis. A Caspase 8 antibody was used by Berges and colleagues to characterize the role of proteosome inhibition by the inhibitor bortezomib in triggering the mitochondrial pathway of...

TRPA1: A contributor to itching and inflammation? Scratch that!

Monday, April 21, 2014 - 14:54

Transient receptor potential A1 (TRPA1) is an ion channel found on the plasma membrane of many cell types that functions in diverse sensory processes such as pain and temperature. The TRPA1 ion channel is specifically expressed in nociceptive neurons, as well as neurons who express the related protein TRPV1. In fact, Brierly et al used a TRPA1 antibody to discover that this ion channel is largely present on smaller neurons vs larger ones (1). A typical inflammatory response instigates tissue repair and eradication of harmful agents after tissue has been damaged. While TRPA1 elicits mostly a positive response, it can also cause chronic inflammation, which can lead to other diseases such as rheumatoid arthritis, chronic itching and asthma (2).

Go Ahead! Make My DNA

Friday, April 18, 2014 - 13:02

DNA methylation plays a critical role the long-term silencing of transcription and is essential for processes such as embryonic development, germline differentiation, and tissue maturation. Dnmt3a is a member of the C5-methyltransferase family that repairs cytosines in dsDNA using a unique nucleophilic attack mechanism dependent upon the transfer of a methyl group from folate intermediates onto nucleic acids.  Dnmt3a in particular performs genome-wide de novo methylation, establishes developmental DNA methylation patterns as well as paternal/maternal imprinting, and is required for methylation of most imprinted loci contained in germ cells. It can be found in both nuclear and cytoplasmic compartments and accumulates in major satellite repeats within pericentric. Canadian researchers collected compelling evidence for an essential role of Dnmt3b (but not Dnmt3a) in apoptosis of cancer cells1. The same group also published a Nature Genetics study...

Apoptosis Happens

Thursday, April 17, 2014 - 16:06

Cell death via apoptosis is a basic cellular function occurring through the cell death receptor family and their ligands which signal through downstream adaptor molecules and the caspase protease family. Caspases have a precursor form composed of a prodomain, and large and small catalytic subunit, and are activated through a cleavage adjacent to an aspartate to liberate units and allow formation of an a2b2 tetramer. Caspase 3 is a cytoplasmic caspase with two isoforms (one acts as a dominant negative inhibitor), and is involved in the activation cascade for apoptosis execution. Caspase 3 cleaves/activates SREBPs, Caspase 7, and Caspase 9. A Caspase 3 antibody was used by Berges and colleagues to assist in their detailed characterizations of...

Different roles of CD31/PECAM1

Wednesday, April 16, 2014 - 16:22

Platelet endothelial cell adhesion molecule 1 (PECAM1), also known as cluster of differentiation 31 (CD31), is a cell-surface glycoprotein expressed on platelets, monocytes, neutrophils, some types of T-cells and NK (natural killer) cells. It makes up a large portion of the endothelial cell intercellular junctions. CD31/PECAM1 is a member of the immunoglobulin superfamily and plays many different roles involving leukocyte migration under most inflammatory conditions, angiogenesis, integrin activation, atherosclerosis and thrombopoiesis.

Diseases associated with CD31/PECAM1 include angiosarcoma and pulmonary vein stenosis.  Among its related super-pathways are response to elevated platelet cytosolic Ca2+ and hemostasis.

CD31/PECAM1 is commonly used as an endothelial marker, particularly in angiogenesis. It has an important role in assisting placental and...

Osteoprotegerin: The Bone Protector

Monday, April 14, 2014 - 14:06

Osteoprotegerin (OPG) is a secretory glycoprotein that is a family member of the TNF receptor (TNFR) superfamily. Osteoprotegerin protects bone by blocking osteoclastogenesis and increasing bone density. Unlike other TNFRs, osteoprotegerin lacks a transmembrane domain as well as any apparent cell-associated signals. High levels of osteoprotegerin mRNA are found in specialized tissues such as lung, heart, kidney, and placenta. There is evidence that osteoprotegerin plays a role in degenerative arterial disease. Sandra et al used ELISA studies employing the osteoprotegerin antibody with hopes of understanding the bone resorption that occurs with the bone tumor ameloblastoma (1). Their findings seem to suggest that ameloblastoma secretes RANKL and TNF alpha. Some interesting studies looking at bone loss in inflammatory bowel disease (IBD) used the...

KLF4 opens the door for stem cell research

Friday, April 11, 2014 - 15:13

KLF4 (Kruppel-like factor 4, Epithelial zinc finger protein EZF) is a zinc finger transcription factor thought to be involved in developmental differentiation and proliferation. It is considered a pluripotency reprogramming factor (PRF) due to its ability to change cell fate via gene expression conversion. Other PRFs including Sox2, Oct4 and KLF4, as well as a discussion about their capabilities, are reviewed by Jauch et al in hopes of enabling the engineering and optimization of PRFs1. Interestingly, recent studies suggest KLF4 may play a role in vascular disease due to its expression in multiple vascular cell types, but this remains to be seen2. Huang’s group used a KLF4 antibody to examine the first generation conversion of quiescent bovine cells into induced pluripotent stem cells (IPSCs) with a novel virus-free poly-promoter vector3.

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Prostate Cancer Infographic

Tuesday, April 8, 2014 - 14:45

Prostate cancer is caused by malignant cells developing in prostate tissue. Common warning signs of prostate cancer include problems with urination (sudden urges, pain, blood in urine, difficulty urinating), experiencing pain in the back and pelvis, and feeling tired/dizzy. There are different tests utilized to diagnose prostate cancer including PSA screening, TRUS, DRE, and biopsy.

Prostate Cancer Infographic

Resources:

  1. Cancer.gov
  2. Cancer.gov 
  3. ...

Breast Cancer Infographic

Friday, April 4, 2014 - 14:45

Breast cancer is caused by malignant cells developing in breast tissue. It is the most commonly diagnosed cancer in women, but advancements in treatment options have seen the death rate decline since the 1990s. Common warning signs of breast cancer include lumps, changes in breast size or shape, discoloration, dimpling of the skin, new concentrated pain in the breast, and rash on the nipple.  Yearly mammograms and self-exams are an important part of early detection of breast cancer.

Breast Cancer Infographic

     Download our breast cancer infographic

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CXCR7 chemokine is not kind: Spotlight on proinflammatory chemokine receptor type 7

Thursday, April 3, 2014 - 16:07

The CXCR7 (C-X-C chemokine receptor type 7) proinflammatory protein is a member of the G-protein coupled receptor (GPCR) family. It is a transmembrane protein first identified as the EBV-induced gene-1, and while it was originally classified as an orphan receptor, it is now known to be a novel and alternate receptor for the chemokines CXCL11 and CXCL12. While the actual function of the CXCR7 protein is not entirely understood, it appears to be elevated in human cancers and important for tumor proliferation, invasion, and metastasis. In particular, the CXCR7 ligands have abundant expression in human astrocytoma and glioblastomal neural tissues.  Singh’s oncology group used a CXCR7 antibody in their immunoprecipitations to identify a novel pathway of ligand-independent signaling in prostate cancer that involves paired regulation with IL-81....

Top 10 Things Only People in a Lab Will Understand

Tuesday, April 1, 2014 - 11:16

After working on several thousand experiments to test products, rigorously quality testing data, and validating products in the lab at Novus Biologicals, we have developed a list of things that only scientists will understand from spending time in a lab. Happy April Fools' Day and enjoy our top 10 list!

Ten things only a person in a lab will understand

 

By: Amelia Zommer, Sam Garcia, Andrew Cosgrove and Lisa Ikariyama

Beta Actin Antibodies: Much More than a Loading Control

Monday, March 31, 2014 - 16:08

Beta-actin belongs to a large family of highly conserved structural cell proteins that regulate cell motility, structure, and integrity. Beta-actin is expressed in all eukaryotic cells making it the ideal internal quantitative control for protein comparative assays. This feature has made it uniquely a historical and heavily-utilized standard, as the public record of scientific publication literature can attest to. Ex vivo familial genome-wide genetics studies trying to identify chemotherapy cytotoxicitygenomic hotspots used the beta actin antibody in genome-wide linkage analyses1. Dietz’s group employed the beta actin antibody to monitor effects of long-term administration of the DNA synthesis inhibitor imatinib meslyate on downstream events such as proliferation and delayed-type hypersensitivity (DTH) in both human primary T-cells and murine in vivo models2.

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Understanding Transcription with RNA Polymerase II

Friday, March 28, 2014 - 12:59

RNA polymerase II is a large 12-subunit complex that synthesizes all mRNAs and several non-coding RNAs in eukaryotic cells. It is a DNA-dependent RNA polymerase enzyme that catalyzes transcription of DNA into RNA based on the four ribonucleoside triphosphate building blocks. RNA polymerase II is regulated through DNA-binding transcriptional regulators in both gene and cell type-specific manners. General transcription factors act as RNA polymerase II accessory proteins for transcription of most class II genes, while co-activators and co-repressors bridge between DNA-bound factors and the transcription machinery. The largest subunit B1 is also the catalytic component that forms the active center along with the second largest subunit. The complex is composed of mobile elements surrounding a large central cleft that open and closes due to a flexible clamp. RNAPII antibody was used in a yeast reconstituted system to demonstrate...

TRAIL-R1: A Trail of Death and Destruction

Thursday, March 27, 2014 - 13:28

Cells undergo apoptotic programmed cell death in response to various stimuli. The process is required for morphogenesis, tissue homeostasis, and host defense. Certain cytokines such as tumor necrosis factor (TNF) and Fas ligand signal through death domain-containing receptors such as tumor necrosis factor receptor 1 (TNFR1) and Fas. The death domain-containing receptor TRAIL-R1 is the latest member in the TNF family and is expressed in most human tissues such as spleen, peripheral blood leukocytes, small intestine, and thymus. Like its fellow receptors TNFR1, Fas, and death receptor 3 (DR3), TRAIL-R1 mediates apoptosis and NF-kB activation in a variety of cells and tissues. The TRAIL-R1 antibody was employed to determine the key role of the signal recognition particle (SRP) complex in apoptosis triggered by TRAIL-R1 but not...

PRMT6: One Function, Many Roles

Monday, March 24, 2014 - 14:06

Protein arginine methylation is a prevalent posttranslational modification in eukaryotic cells. It regulates RNA processing, trafficking and nascent pre-RNA metabolism, receptor-mediated signal transduction, and transcriptional activation processes. PRMT6 was originally identified through a genome-wide search for human protein arginine N-methyltransferase (PRMT) family members. This particular enzyme has type I PRMT activity and with regards to substrate specificity, is functionally distinct from two other previously characterized type I enzymes - PRMT1 and PRMT4. PRMT6 catalyzes the sequential transfer of a methyl group from S-adenosyl-L-methionine to the side chain nitrogens of arginine residues within proteins to form methylated arginine derivatives and S-adenosyl-L-homocysteine. In addition to methylating target substrates, PRMT6 also displays automethylation activity – this is unusual in that it is the first PRMT to do so. It is localized to the...

CXCR4 Studies on Neural and Stem Cells

Friday, March 21, 2014 - 11:52

The CXCR4 (C-X-C chemokine receptor type 4) protein is one member of the G-protein coupled receptor (GPCR1) family. As a multipass membrane protein that is found in several tissues, it is the receptor for the C-X-C chemokine CXCL12/SDF-1. The CXCR4 ligand works by modulating intracellular calcium ion levels and activating the MAPK1/MAPK3 signal pathways. CXCR4 is also a receptor for extracellular ubiquitin, which produces enhanced levels of intracellular calcium and reduced levels of cellular cAMP. The CXCR4 protein governs a large variety of cellular processes ranging from hematopoiesis to cardiac ventricular septum formation. It has a key role in the vascularization of the gastrointestinal tract through controlling vascular branching and endothelial cell remodeling processes. Stumm’s group used the CXCR4 antibody  in immunohistochemistry (IHC) experiments to profile key factors...

Nur77 Activation and Tumor Suppression

Thursday, March 20, 2014 - 14:31

Nur77 is a member of the steroid/thyroid hormone phosphoprotein receptor superfamily. It is heavily post-translationally modified and rapidly induced in response to androgens and growth factors. It governs fundamental processes such as cell proliferation, differentiation, and apoptosis. For some time, it was classified as an orphan receptor with no identifiable or known ligand, but scientists finally were able to identify a novel class of methylene-substituted diindolylmethanes (C-DIM) as its endogenous ligand. Researchers have used the NUR77 antibody to show that the activation of Nur77 in pancreatic, prostate, and breast cancer cells induces apoptosis1.

Immunohistochemistry-Paraffin: NUR77 Antibody ...

AKT1, Scene 1: The Cell Must Go On

Wednesday, March 19, 2014 - 13:30

Akt1 is a serine/threonine-specific protein kinase involved in many cellular signaling pathways. The major function of this kinase is to mediate cell survival, but it also plays key roles in various other cellular functions such as glycogen synthesis and cell growth. Akt1 acts as a transducer for growth factor receptors that modulate phosphatidylinositol 3-kinase (PI3K) activity. Akt is believed to be a factor in cancer as the tumor suppressor phosphatase and tensin homolog (PTEN) was found to antagonize both PI-3 kinase and Akt kinase activity. Akt’s major phosphorylation sites located at threonine 308 and serine 473 are required for its activation and three mammalian isoforms have been identified. Spanish researchers used the Akt antibody in their characterizations of transgenic mice with membrane-targeted PI3K to monitor morphological changes and tumorigenesis in mammary ducts1...

Livin: On a Prayer

Monday, March 17, 2014 - 15:51

Livin is a member of the inhibitor of apoptosis proteins (IAP) family that regulates programmed cell death. The Livin protein contains a single baculovirus IAP repeat (BIR) essential for function, along with a COOH-terminal RING-type zinc finger domain. In general, IAP proteins block apoptosis by binding and inhibiting caspases through this BIR domain. Two Livin splicing variants, alpha and beta, have been identified, and each has different anti-apoptotic properties. With Livin expression low in adult tissues, it is somewhat higher in developmental tissues. Many RING finger-containing IAPs possess E3 ubiquitin ligase activity, with Livin utilizing a Smac/DIABLO-mediated pathway. There is a large body of literature that establishes Livin as a player in a wide spectrum of tumor types, thus it holds significant potential as a both a diagnostic and prognostic tumor marker. IAP overexpression and the resulting apoptotic...

TLR1

Friday, March 14, 2014 - 14:37

TLR1 belongs to the Toll-like receptor (TLR) family, and is a key player in the recognition of pathogens as well as the activation of the innate immunity system. TLRs are highly conserved proteins with a high degree of structural and functional homology from Drosophila to humans. By recognizing pathogen-associated molecular patterns (PAMPs) that are exhibited across a spectrum of ligands, including infectious agents, TLRs modulate cellular cytokine production needed for efficient innate immunity development. Rat reproductive tract studies in Pallodino’s lab with TLR1 antibody demonstrate that the mRNAs of different TLRs and TLR adapter proteins are expressed in contrasting patterns and locations in different rat male reproductive tissues1. The same research group also used the TLR1 antibody  to perform analogous detailed studies in epididymal cells...

RANK and RANKL: Climbing the Ranks of Bone Metabolism

Thursday, March 13, 2014 - 10:40

Apoptosis, or programmed cell death, is a normal component of cellular differentiation and the development of multicellular organisms. Receptor activator of NF-kB (RANK) lacks significant homology with the other family members of the tumor necrosis factor receptor (TNFR) superfamily. The cytoplasmic domain of RANK interacts with the tumor necrosis factor receptor associated factors, adaptor proteins such as TRAF2, TRAF5 and TRAF6. Overexpression of RANK activates NF-kB and c-Jun-terminal kinase (JNK) pathways. RANK and RANKL signaling is well characterized in the bone remodeling system and both are key players in osteoclast activity and induction. Riegel’s group used the RANK antibody to characterize the expression and localization...

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