Antibody News

An Overview Of HIF And Its Role In Hypoxia

Friday, February 12, 2010 - 08:54

Hypoxia-inducible factor (HIF) is a DNA-binding protein that regulates homeostasis via transcription of a wide range of genes. It is inactive in oxygenated cells, but becomes active in hypoxic, i.e. low oxygen conditions. HIF proteins consist of a heterodimeric complex of identical alpha and beta sub-units. The α is degraded in normal oxygen conditions, while the β remains independent of O2 concentration.

HIF is implicated in a wide range of tumours. Recently, we at Novus Biologicals cultured the H1 alpha67 hybridoma cell line to produce the monoclonal anti-HIF 1 alpha antibody. This is one of a number of products in our hypoxia antibody catalogue routinely used in cancer research.

The involvement of HIF-1 in tumour development is obvious when you consider the complexity of the hypoxia pathway. Under normoxic conditions, the α-subunit undergoes prolyl hydroxylation and is tagged by E3 ubiquitin ligase for degradation by the cell...

The Role Of Hypoxia-Induced Autophagy In Cancer

Thursday, February 11, 2010 - 13:20

Hypoxia inhibiting factors protect the cell from death. Autophagy proteins do the opposite. However, hypoxia-induced autophagy has been shown to have a role in cell survival by targeting only the organelles which are oxygen-demanding i.e. mitochondria. Although useful, the mechanism has been implicated in the development of tumours, therefore antibodies against the relevant proteins feature highly in the cancer research pages of our antibody catalogue.

Cell survival under hypoxic conditions is controlled by the HIF (hypoxia-inducible factor) family, complexes of transcriptional proteins which are normally dormant, but are activated by the reduction of intracellular oxygen tension. HIF proteins control a number of gene pathways which then work to restore homeostasis. Several of these proteins have shown to be active in forming cancerous tumours.

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Latest Developments In NER Research

Wednesday, February 10, 2010 - 08:50

All cancer genomes carry somatic mutations. These include base substitutions, rearrangements, insertions and deletions (indels). Antibody suppliers have seen tremendous growth in the field of cancer research recently, with antibodies to at least 400 cancer genomes.

Driver mutations are direct somatic changes which confer an advantage for clonal growth and can lead to oncogenesis. Passengers or “silent mutations” do not lead to cancer development, but give important information on pre-cancerous cell changes. Epigenetic mutations do not alter the genetic code, but can still be passed on to at least one successive generation. All are of interest.

DNA damage, such as strand breaks, is common in normal cells, and most do not cause mutation. The changes are recognised by cell enzymes, and various DNA repair mechanisms, such as NER (nucleotide excision repair) correct the damage and prevent driver...

Cell Cycle Mechanisms And Their Role In Oncological Research

Tuesday, February 9, 2010 - 11:17

Studies using antibodies specific against cell cycle regulatory proteins have opened up many new avenues of cancer research. The mammalian cell undergoes 4 distinct phases during mitosis. Initiation is controlled by assembly and activation of the CDK proteins (Cyclin Dependent Kinases.) There activation is governed by phosphorylase modifications and the regulatory kinase subunit cyclins. Cyclins comprise two groups: G1 and G2, or mitotic cyclins. The G1 group regulates G1 to S-phase progression of mitosis, while the G2 cyclins control G2 to M progression.

The cyclins bind to CDK, leading to phosphorylation and inhibition of pRb, a tumour suppressor protein which controls progression from the G1 to S phase. Studies show this is partly done by the inhibition of the E2F transcription factors, which are known to encourage cell growth.

The proteins regulating the cell cycle are of interest in oncology studies, as both D-type cyclins...

First Catalogue Of Somatic Mutations In Human Cancer Cells Revealed

Monday, February 8, 2010 - 08:43

Antibody suppliers have seen an enormous growth in the area of DNA repair in recent years. DNA damage causes structural changes within the cell that can cause genome mutations to occur, a common cause of tumour development and an important area of research for antibody suppliers like us at Novus Biologicals.

NER (nucleotide excision repair) is a global genome repair process, activated by DNA damage caused by (among other things) UV light. This is a common cause of malignant melanomas. NER repairs distortions of the DNA helix by excising the oligonucleotide (short strand section) containing the lesion. Reproductive DNA polymerases fill the resultant gap using the undamaged strand as a template. There is also a transcription-coupled form of NER, which prevents modification of the transcription process by damaged DNA. This appears to be more efficient at preventing mutations, which usually occur at...

Antibodies Targeting S-Phase Checkpoint Signalling Pathways

Friday, February 5, 2010 - 09:14

Research into checkpoint signalling (CPS) forms a major part of IHC research. CPS regulates DNA repair mechanisms, apoptosis and cell cycle progression. Antibody research into checkpoint proteins has also shown they play an essential role in tumour development. ATM and ATR are two important checkpoint mediators which are well reported in cancer studies.

Cellular checkpoints are signal transduction pathways which interact with many other mechanisms, such as that governing growth factor availability. We at Novus Biologicals have a large number of CPS immunoglobulins on our antibody database.

The S-phase checkpoint is involved with DNA repair and cell-cycle progression. It is known to react to DNA damage by reducing the rate of synthesis. Although it is still the least understood of the cellular checkpoints, recent studies on infrared-induced S-phase checkpoint activation have thrown valuable...

Fragment Binding In IgG And IgM Antibodies

Thursday, February 4, 2010 - 12:10

Research facilities often require a supply of antibodies of all classes, in both their whole and fragmented forms. There are both pros and cons to using fragments in place of entire proteins. As IgG is the most prevalent class on our antibody database, we’ll cover that one first.

IgG consists of two heavy chains and two light chains, held together by hydrophobic interactions and disulphide bonds. Secondary (anti-IgG) antibodies are derived by injecting an animal of one species (e.g. a sheep) with whole Ig from another species (e.g. mouse) that produced the 1° Ab to the antigen. This results in polyclonal secondary Ab which reacts to both the H and L chains. It reacts to every possible primary epitope, resulting in the largest possible signal.

However, the same light chains are common in all the antibody classes,...

Choosing Antibodies For Fragment Specificity

Wednesday, February 3, 2010 - 10:05

For those who are new to working in this area of work, it may prove useful to outline a few tips on choosing antibodies.

Immunoglobulins are purchased as primary or secondary, and mono or polyclonal proteins. Primary antibodies bind directly to the antigen, and can be conjugated (labelled) with an enzyme or fluorescent dye, to produce a visible signal when the appropriate substrate is added. This allows direct detection of the antigen.

Alternatively, the primary can be used unconjugated, and probing done with a secondary antibody (conjugated or unconjugated) that binds the primary.

Secondary antibodies have several advantages over primary (10) immunoglobulins. Firstly, it makes immunoassays less expensive, as unconjugated 10 immunoglobulins can be bought in bulk and used as stock reagents for different lab processes. Secondly, you can label...

FANCD2 Function And Its Link To Tumour Development

Tuesday, February 2, 2010 - 09:02

FANCD2 is one of a number of proteins in the FANC group. It undergoes modification in both its normal and disease state; therefore our FANCD2 antibodies are modified and conjugated in various ways for research.

FANCD2 (Fanconi Anaemia Complementation Group D2) is one of several FANC proteins involved with development of Fanconi Anaemia, a genetic disease that increases cell susceptibility to tumour development. In its normal pathway it interacts with several other genes known to cause cancer, for example BRCA1.

FANCD2 is routinely modified by interaction with other proteins, to enable it to carry out normal tasks. The protein occurs in all cells and plays a role in DNA-repair, inhibiting DNA synthesis following exposure to ionizing radiation, as well as resisting cross-linking. It also activates S-phase checkpoints following phosphorylation by ATM. It has been shown FANCD2 may also be part of the DNA repair mechanism, repairing...

NHEJ DNA Repair Mechanisms

Monday, February 1, 2010 - 09:51

DNA repair processes allow cells to identify and correct lesions in the DNA helix. It is normal for these lesions to happen. Environmental processes such as exposure to UV light and chemicals, as well as day-to-day metabolic changes, can cause hundreds of thousands in a day.

Some agents can damage the DNA’s ability to encode cell proteins, or cause mutations in the genome which affects cell survival following mitosis. These mutations take many forms, of which double-strand breaks are the most serious. The type of damage, and its cause, determines what DNA repair mechanism will be involved. For this reason, the DNA repair section of an antibody catalogue can have a number of sub-sections; among them are mismatch repair, NER and non- homologous end-joining (NHEJ) antibodies.

NHEJ is used to repair double-strand breaks, and is the dominant DSB repair mechanism in many mammals. The ends are...

Approaching Apoptosis With Antibodies

Monday, January 25, 2010 - 10:00

Not everyone knows how antibodies influence animal life, so this article is, in part, a very brief introduction. Novus Biologicals offers a printed version of their Apoptosis Catalog that contains additional information on apoptotic mechanisms; email promotions@novusbio.com to get a copy.

Apoptosis is triggered by a variety of signals and takes place by one of several mechanisms. These involve cell surface receptors, cytokines, tumour necrosis factors, proteins such as Bcl-2, Bax and Apaf-1, the caspase cascade, and apoptosis-inducing factors.

Specific antibodies can assist in pinpointing exactly which factors and signals are involved in any particular situation.

Apoptosis is vital in the breakdown of early embryonic structures, so as to permit development and maturation. Without apoptosis, the caterpillar cannot metamorphose into the...

Antibodies Reveal A Non-apoptotic Role For Uterine Caspase 3

Friday, January 22, 2010 - 10:00

We have seen that antibody research can deliver progress in areas where other methods have not enjoyed such success.

Caspase 3 is primarily known as an effector molecule in apoptosis, the process of programmed cell death. However, a study by Jeyasuria et al (Biol. Reprod. 2009, 80(5) pp. 928-934) has found that caspase 3 may have a role in preventing excessive uterine contractions before pregnancy reaches term. This is essential to preventing premature labour. The authors used immunological techniques with a group of antibodies to demonstrate this phenomenon. Smooth muscle γ-actin is a protein found only in smooth muscle. Thus, antibody to smooth muscle γ-actin (ACTG2) from Novus Biologicals was chosen to identify caspase 3 action in the smooth muscle of the uterus.

On the basis of their results, the authors concluded that the elevated activity of caspase 3 seen in the pregnant mouse...

Antibodies To GABA-A Receptor Subunits Unlock Some Of The Secrets Of Autism

Wednesday, January 20, 2010 - 10:00

Autism is a condition which demands more research - even if some autistic people do not want their condition to be ‘cured’, most would like some of their symptoms to be alleviated.

Fatemi and colleagues (J Autism Dev Disord. 2009, 39(2) pp. 223–230) subjected brain tissue from autistic and control subjects to SDS-PAGE followed by Western blotting and incubation with antibodies to four GABA-A receptor subunits.

Levels of GABRB3, which was identified using an antibody from the Novus Biologicals antibody catalog, were decreased in the cerebellum and parietal cortex of autistic subjects. The cerebellum also showed decreased levels of GABRA1. The parietal cortex showed decreased levels of GABRA1, GABRA2 and GABRA3. Only GABRA1 was decreased in the frontal cortex of autistic subjects.

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Approaching apoptosis with antibodies

Monday, January 18, 2010 - 14:05

Not everyone knows how antibodies influence animal life, so this article is, in part, a very brief introduction. Apoptosis is triggered by a variety of signals and takes place by one of several mechanisms. These involve cell surface receptors, cytokines, tumour necrosis factors, proteins such as Bcl-2, Bax and Apaf-1, the caspase cascade, and apoptosis-inducing factors.

Specific antibodies can assist in pinpointing exactly which factors and signals are involved in any particular situation.
Apoptosis is vital in the breakdown of early embryonic structures, so as to permit development and maturation. Without apoptosis, the caterpillar cannot metamorphose into the butterfly, the tadpole cannot lose its tail and neural synapses cannot form.
The detachment of the uterine endometrium at the start of menstruation involves apoptosis. Lymphocytes proliferating in response to an antigenic stimulus undergo apoptosis when this immune response is no longer...

Antibody-based Techniques Clarify Mechanisms Regulating Epithelial Cell Migration

Monday, January 18, 2010 - 10:00

Researchers can manipulate antibodies to yield very impressive research outcomes, which may prove highly relevant to the medical treatment of the future.

Severson et al (MBC 2009, 20(7) pp. 1916-1925) used antibodies, including monoclonal rabbit anti-JAM-A and monoclonal rabbit anti-β1 integrin from Novus Biologicals to investigate epithelial cell migration.

In a previous study, this team demonstrated that cell migration is regulated by junctional adhesion molecule A. JAM-A is a transmembrane protein in tight junctions, namely areas where membranes of adjacent cells join closely together. In epithelial cells, JAM-A is thought to decrease paracellular permeability and favour epithelial cell migration. These functions maintain the barrier function of intestinal epithelium. Barrier function is compromised in some intestinal diseases. Stress can cause further dysfunction. The net result is...

Offering Tailored Assistance To Researchers Needing Antibodies

Friday, January 15, 2010 - 10:00

Researchers requiring antibody products can have some difficulty in obtaining precisely what they need. However, recent developments may make this dilemma less of an issue than it has proven in the past.

The Novus Biologicals antibody catalog contains close to 105,000 products, with new products being introduced constantly. Researchers who are too hard-pressed to search the catalog can call on the Novus Antibody Concierge. Scientists are encouraged to submit information about their specific needs. The Antibody Concierge service will respond in two business days with details of relevant products. Moreover, if the antibodies needed are not available through Novus Biologicals, information on alternative sources will be supplied.

In addition, Novus Biologicals invites collaboration with investigators via the Novus Antibody Grant Program. Researchers who...

Anti-beclin Antibodies And Autophagy

Wednesday, January 13, 2010 - 10:00

Antibodies to beclin 1 may help elucidate the significance of this protein and its role in autophagy.

Autophagy is the lysosomal degradation of cell constituents. It occurs in malnutrition, enabling the body to recycle cell components to provide metabolic precursors. Autophagy is also involved in the response to pathogens and in other processes. Some aspects are summarised here.

Western Blot: Beclin 1 Antibody Western Blot: Beclin 1 Antibody

Homozygous beclin 1-/- embryos from chimeric beclin 1+/- mice all died in early embryogenesis. This was considered to be due to defective visceral endoderm, in which beclin 1 is normally strongly expressed. Furthermore,...

Antibodies Point To New Target For Cancer Chemotherapy

Monday, January 11, 2010 - 10:00

Treating cancer is a major health priority in western society. Coupled with attempts to alter unhealthy behaviour, it is hoped that better cancer treatment can reduce premature deaths.

Anti-APE1 mouse monoclonal antibodies from Novus Biologicals were antibodies used to investigate drug resistance in non-small cell lung carcinoma (Wang et al., Lung Cancer 2009, 65(3), pp. 298-304). Tumour drug resistance results in less successful chemotherapy.

Apurinic/apyrimidinic endonuclease (APE1) has a key role in the repair of DNA damage. By protecting cells from the genotoxic and cytotoxic effects of oxidising agents, APE1 counters the development of a number of pathologies.

Conversely, in the case of tumour cells, the protective effects of APE1 will have negative consequences if they result in the tumour having an increased capacity to resist anti-cancer treatment.

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Antibodies Clarify The Role Of Diabetes In The Pathogenesis Of Alzheimer's Disease

Friday, January 8, 2010 - 10:00

Anti-AGE antibodies are not the elixir of youth as their name might imply! They have nevertheless provided new information about Alzheimer’s disease, the major cause of dementia in old age.

Advanced glycation end products (AGE) are produced by glycation and oxidation reactions between sugars and free amino groups on proteins and amino acids. They are implicated in a wide range of pathologies. AGE can form in cooked foods. In addition, glycation reactions within the blood form endogenous AGE. High blood sugar levels favour endogenous AGE production.

Diabetes is a risk factor for Alzheimer’s. This motivated a study by Burdo et al (Neurobiol. Aging 2009, 30(12), pp. 1910-1917). The authors used anti-AGE antibodies from Novus Biologicals to detect AGE...

New Light On Fluorescent Antibodies

Wednesday, January 6, 2010 - 10:00

Extra-bright antibodies increase the specificity and sensitivity of any fluorescence-based procedure. They are stable over a wide pH range and are also highly ‘photo stable.’

Novus Biologicals now offer more than 1,150 antibodies conjugated to DyLight® fluorescent dyes.

As fluorescent imaging technology advances, there is a growing drive to achieve increasingly quantitative measurement of fluorescent signals.

Ultimately, this would permit determination of the absolute quantity of a target molecule within a cell or compartment using a fluorescent antibody technique.

A major obstacle to such a technological breakthrough is the fact that the fluorescent intensity of some dyes can be significantly affected by various cellular environmental factors. Cellular organelles show a wide variation in pH, ranging from as...

Antibodies In The Differential Diagnosis Of Undifferentiated Tumors

Monday, January 4, 2010 - 10:00

Immunohistochemical testing using antibody panels has a valuable role in cancer diagnosis. Some tumors, especially more malignant ones, tend to lose the appearance of the tissue of origin. However, knowing the tissue of origin assists the physician in selecting the best treatment thus a differential diagnosis is required.

One such example is a tumor containing large cells that somewhat resembles epithelium cells. This could be an undifferentiated melanoma, lymphoma or carcinoma. In order to distinguish between these possibilities, it is recommended to test the tumor tissue using a panel of antibodies against the following substances: keratin, epithelial membrane antigen (EMA), vimentin, leukocyte common antigen (CD45), S100 protein and HMB-45. The pattern of positive versus negative reactions will enable the type of the tumor to be determined.

The vast antibody catalog...

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