Posts Tagged ‘Antibody’

Signalling Advances in Adiponectin Antibody Research

Monday, May 16th, 2011

Adiponectin is an adipocytokine protein that positively regulates metabolism of lipids and glucose by suppressing glucose production from the liver, stimulating insulin sensitivity, and increasing the rate of fatty acid oxidation and glucose uptake. Insulin resistance, obesity and dyslipidemia (abnormal blood lipid levels) are all linked to Adiponectin deficiency. The Adiponectin antibody is also used in Type 2 Diabetes research.

In recent years, a number of antibody studies have focussed on the metabolic pathways governing Adiponectin. In 2003, Yamauchi et al identified two Adiponectin receptors, Adipo R1 and Adipo R2. Subsequent experiments showed Adipo R1 to be the primary receptor in skeletal muscle, which is the body’s main glucose-utilising tissue. However, the underlying mechanism of action remained unclear.

In 2010, M. Iwabu et al published a paper which significantly advanced Adiponectin antibody research, disclosing new facts about the Adipo R1 signalling pathway. Using mice depleted of skeletal muscle Adipo R1- (m-Adipo R1KO), the researchers were able to confirm Adipo R1 affected insulin sensitivity and glucose tolerance. Markedly higher insulin and plasma glucose levels were recorded in m-Adipo R1KO mice than wild-type controls, while antibody assays also revealed marked alterations in insulin-induced phosphorylation of key signalling molecules, including Akt, IRS-1, JNK and p70 S6 kinase. The m-Adipo R1KO group also showed decreased mitochondrial biogenesis, with reduced levels of mitochondrial proteins, PGC1 alpha transcription factor and mitochondrial DNA.

The m-Adipo R1KO mice also demonstrated enhanced oxidative stress coupled with impaired oxidation of fatty acids, a common occurrence with insulin resistance. These effects were partially reversed by exercise, showing exercise may be a useful therapeutic tool in cases of impaired Adiponectin function. We at Novus Biologicals have a wide range of Adiponectin antibody products in stock.

Featured Product Citation using Novus’ hTERT Antibody

Monday, May 2nd, 2011

In the article “Mesenchymal stem cells derived from human gingiva are capable of immunomodulatory functions and ameliorate inflammation-related tissue destruction in experimental colitis” from the December 2009 edition of the Journal of Immunology, Dr. Qunzhou Zhang et al. cite using Novus’ mouse monoclonal Telomerase Reverse Transcriptase Antibody (cat# NB100-317). Specifically, Novus’ hTERT antibody is used for immunofluorescent staining on human gingiva-derived mesenchymal stem cells (GMSC). Novus’ hTERT specific antibody helps the authors demonstrate that the GMSC’s are in fact a new population of precursor cells “which exhibit several unique stem cell-like properties as MSCs derived from bone marrow and other postnatal tissues.”

Novus Biologicals offers a complete line of Telomerase Reverse Transcriptase antibodies for Western blot, immunostaining, flow cytometry and immunoprecipitation. Novus also offers hTERT lysate, hTERT antibody pack, hTERT RNAi, and ancillary reagents for your hTERT research. Finally, you may find a wide range of other cellular markers and antibodies related to DNA repair online at www.novusbio.com.

Zhang Q, Shi S, Liu Y, et al. Mesenchymal stem cells derived from human gingiva are capable of immunomodulatory functions and ameliorate inflammation-related tissue destruction in experimental colitis. J Immunol. 2009 Dec 15; 183 (12): 7787-98. [PMID: 19923445]

New Research Takes Gag Off HIV Secrets

Wednesday, November 24th, 2010

Antibody studies into the human immunodeficiency virus (HIV) centre around Gag, a highly complex polyprotein that has so far defied attempts to unravel its complex and varied modes of action. Now, a team from the NIST Center for Neutron Research have revealed a new model which has allowed the protein to be studied in far more clarity. The hope with antibody suppliers is that it will pave the way to understanding many more large, unfathomable proteins.

HIV1 antibodies have uncovered at least some of the complexities of the Gag protein, which performs highly complex tasks during viral assembly, twisting into convoluted shapes within the host cell. During the initial stages, membrane associations are formed which enable HIV genetic material to be transported to the cell membrane. The opposite end of the Gag protein becomes anchored here, elongating into a rod-like shape which helps form a barrier around the virion particles. This leads to budding, maturation and dispersal. During viral assembly, Gag precursors selectively bind to and package genomic RNA strands. Many other proteins re involved – for example, Capsid protein p24, which is thought to form the core of the virus when encapsulation of the genomic RNA-nucleocapsid complex takes place.

However, while antibody studies have helped shed light on the multiple roles Gag plays in HIV assembly, the finer details have remained a mystery. Now, the NCNR team have developed an artificial cell membrane that enables viewing of Gag function with neutron probes. By mimicking various stages of viral development, the team were able to observe changes in Gag conformation – many of them never seen before.

We at Novus Biologicals carry a large number of antibodies for HIV research, a complex but fascinating area.

Next-gen Sequencing and SLC26A3 Research

Thursday, September 30th, 2010

The SLC26A3, also known as DRA (downregulated-in-adenoma) gene is a member of the sulphate anion transporter family, serving an important role in the exchange and transport of chloride, bicarbonate and sulphate ions at plasma membrane sites. To date, 9 antibodies and recombinant proteins for SLC26A3 can be found on our antibody database.

More than 20 mutations of SLC26A3 are known to exist, one of which is responsible for the rare autosomal recessive disorder congenital chloridorrhea, or congenital chloride diarrhea (CLD). In September 2009, next-generation DNA sequencing was used to diagnose congenital chloride diarrhea, or CLD, in a patient previously thought to be suffering from the salt-wasting disease Bartter syndrome.

This was only possible due to the advantage next-gen sequencing presents over the conventional Sanger technique: that of analysing many hundreds of short-chain DNA sequences, rather than just one single, long chain of bases. The molecular diagnosis was confirmed with a clinical follow-up, following which next-gen sequencing SLC26A3 antibodies were used to confirm several more misdiagnosed cases of CLD. This was the first time whole exome (i.e. genome) sequencing had been used to make a genetic diagnosis in a patient.

As well as paving the way for use of whole-exome sequencing in routine clinical diagnosis, next-gen technology could also give microarray assays a serious run for their money. Like NGS, microarrays can detect thousands of genes in one assay. The technique relies on hybridization, in which fluorescently labelled protein DNA samples and antibodies bind (hybridise) on a biochip. We at Novus Biologicals have a broad antibody database suitable for many types of biological assay.

Forkhead transcription factors and age-related DAF-16 studies

Monday, August 23rd, 2010

Orthologues are one of the classes of homologue genes. They occur in different species, but are linked by a common ancestral pathway. During evolution, they retain the same original function, irrespective of the species. Among the orthologues covered on our antibody database are those of the Forkhead transcription factor (FOX) superfamily of proteins.

Forkhead box O-class (FOXO) transcription factors are mammalian homologues of DAF-16, a protein which is known to be a lifespan regulator of the nematode worm Caenorhabditis elegans. Among the transcription factors we at Novus Biologicals have in our antibody catalogue are FOXO1, FOXO3a and FOXO4. In mammals they are linked to apoptosis, DNA repair, response to oxidative stress, metabolism and the regulation of the cell cycle.

FOX01a, 03a and 04 have been linked to tumourigenesis, having first been identified at human tumour chromosomal breaks. Antibody studies showed them to be targets of the PI3K/PKB pathway, which is known to play a part in oncogenesis. The discovery that DAF-16 was a target for PKB in C.elegans proved it to be a homologue of FOXO1a, FOXO3a and FOX04, which are similar in structure to DAF-16 and are its mammalian equivalent.

The FOX0 genes are known to play a part in age-related conditions such as cancer and diabetes. Recently, researchers at the University of Massachusetts Medical School discovered a new DAF-16 isoform, DAF-16d/f, which together with the isoform DAF-16a was shown to regulate longevity in C.elegans. DAF-16 is part of the insulin signalling pathway, and is at the centre of a complex network of protein pathways.

By performing anti-aging antibody studies on a relatively simple animal with genetic links to humans, it is hoped to uncover some of the causes of human age-related diseases.

Explaining Genomic Antibody Technology

Monday, July 12th, 2010

Recently, we at Novus Biologicals became partners with Strategic Diagnostics Inc (SDIX), one of the largest antibody producers in the US. The objective was to extend our antibody database by over 800 of SDIX’s polyclonal cancer antibodies, created by their unique Genomic Antibody Technology (GAT) system, as well as creating novel GAT immunoglobulins against targets specific to our own antibody catalogue. However, what exactly is GAT, and why is it so superior?

With ever more sophisticated assay testing and data retrieval techniques becoming established in the life sciences arena, it’s obvious the reagents must be of a similar quality. In cancer studies especially, it is alterations in protein structure which scientists are looking for. To separate potential oncogenes from normal, non-cancer causing proteins, it’s important that the targets for which antibodies are developed are as near their natural state as possible.

Using Genomic Antibody Technology, a large variety of antibodies targeted to antigens in their naturally folded forms has been developed. This is because the antibodies are produced in vivo so that they are able to develop and form accurately and with their natural functions. As more proteins are discovered, GAT antibodies can be added to our database. Creating a system by which any immunoglobulin can recognise a protein in its natural folded state is a tremendous advantage to clinical research. Proteins that were previously of restricted value can now be used in highly valuable assay areas such as chromatin immunoprecipitation (ChIP), sandwich immunoassays and flow cytometry.

Another advantage to GAT is its ability to create reagents against difficult target antigens, such as highly conserved nucleic acid sequences. The development of Genomic Antibody Technology is a tremendous step forward, considerably enhancing an already extensive antibody catalogue.

HnRNP Antibodies Shed New Light On Fight Against Gastric Cancer

Monday, June 28th, 2010

We at Novus Biologicals offer many antibodies relevant to cancer research. Among the areas covered by our antibody catalogue are the nuclear matrix proteins, which include the heterogeneous nuclear ribonucleoproteins (hnRNPs). hnRNP antibodies were recently used in a new study in gastric cancer treatment.

The nuclear matrix is a filamentous and complex network of proteins and RNA fibrils, comprising the fibrous nuclear lamina and numerous nuclear pores. The matrix acts to provide a structural framework for the organisation of chromatin (the genetic component of the cell). Once thought to be a fairly static structure, antibody studies have shown matrix proteins play a dynamic role, interacting freely with chromatin. HnRNP proteins, for example, are involved in various nuclear activities, including pre-mRNA processing, mRNA translation and transcription.

The human nuclear cell matrix has been shown to be tumour specific. The human nuclear matrix of tumor cells is distinctly different from that of normal cells. Changes within the structure relate closely to DNA duplication and transcription. This has led to them becoming useful biomarkers in cancer studies.

Recently, a team from Xiamen University, China, studied the expression of nuclear matrix proteins before and after HMBA-induced differentiation of gastric tumour cells. 15 proteins were identified, of which 8 were down-regulated and 7 up-regulated. Antibody assays revealed that nucleophosmin, prohibitin, hnRNP A2 and hnRNP B1 were among the proteins that were significantly inhibited.

The antibody results confirmed that specific nuclear matrix proteins are altered during human gastric cancer cell differentiation. Furthermore, they proved the important role the NMP antibody database can play in uncovering the mechanisms regulating cancer cell differentiation and proliferation.

Transcription Factor Antibodies Used In Landmark Evolutionary Study

Friday, June 25th, 2010

We at Novus Biologicals offer a full antibody database targeted to transcription factor research. Recently, CEBP antibodies were used in a research study exploring the evolution of gene regulation in various vertebrates. The results revealed surprising discrepancies between genomes, and the conservation of transcription factor function over large evolutionary distances.

Transcription factors bind to specific regulatory areas of DNA sites, and direct gene expression by the activation or inhibition of RNA polymerases. They may act independently, or as part of a larger protein complex. The diversity of genes within the animal kingdom means a vast number of transcription factors exist. We at Novus Biologicals have over 2,300 transcription factor-related products in our antibody catalog, with many more yet to be identified.

CEBPs (CCAAT enhancer binding proteins) are transcription factors which regulate the balance between cell differentiation and cell growth. CEBP alpha is one of several CEBP isoforms, all of which have similar DNA binding mechanisms. CEPB/A antibody studies have shown a possible role as a tumour suppressor, through interaction with CDK and inhibition of mitosis.

Genes dependent on a specific transcription factor are often bound by that TF in multiple species. The recent study sought to trace the evolution of gene regulation through comparing 2 evolutionarily conserved transcription factors – CEBPA and HNF4A – in the liver cells of 5 vertebrate species, including man. The genomes spanned 300 million years of evolution.

By using a carefully structured antibody database, it was shown that, although CEBPA and HNF4A regulate similar target genes in all 5 animals, the binding mechanisms had not been conserved as evolutionary divergence took place.

The Link Between Base Excision Repair And Cancer Antibodies

Wednesday, June 23rd, 2010

Base excision repair is the most fundamental DNA repair mechanism, dealing with alterations arising in individual DNA bases during cellular metabolism. We at Novus Biologicals have a large BER antibody database, which has proven important in various cellular studies.

BER has been shown to be the predominant repair mechanism in post-mitotic areas such as brain tissue. Here, modifications of single bases are far more likely to occur than large-scale damage to the DNA helix. Levels of base excision repair proteins have been shown to be elevated or altered in certain cancers, for example prostate cancer and brain tumours.

The two main routes of base excision repair are the long-patch and short-patch repair pathways. Both follow the same 4 basic steps, and although the protein pathways are independent of each other, cross-overs can occur – for example following cleavage.

The first stage is the detection and removal of the altered base by surveillance glycosylases. In the next stage, a specific apurinic or apyrimidinic endonuclease (APE) cleaves the strand at the created abasic (baseless) site, ready for insertion of the correct nucleotide by DNA pol beta. There are 4 APE classes. All cleave DNA at the 3’ and 5’ phosphate groups, generating either a 3´-phosphate and a 5´-OH, or a 5´- phosphate and a 3´-OH.

Human APE1 is a class ll endonuclease that, besides its role in BER is known to act as a redox factor, facilitating the DNA binding of a number of transcription factors including FOS, JUN, NfkB, p53 and HIF-1a. APE1 antibodies have been used to show elevation of APE1 in prostate cancer cells. Through BER antibody studies, unique links have been shown between apoptosis, transcription regulation, oxidative signalling, cell-cycle control, tumour formation and DNA repair.

NER And Its Relationship To Other DNA Repair Pathways

Monday, June 21st, 2010

A large number of antibody assays are devoted to the study of nuclear excision repair (NER) proteins. However, there are a number of other DNA repair pathways, many of which are instigated by NER and share the same proteins. DNA repair antibodies are widely used in cancer research; our antibody catalogue at Novus Biologicals has more than 16 subsections devoted to DNA repair.

NER is subdivided into global repair, which repairs damage to any part of the DNA structure, and transcription-coupled repair, which preferentially recognises damage in an area where simultaneous transcription is occurring. The mechanism by which this occurs is still not fully understood, though it is known that XPC is essential. Antibody studies have shown that damage recognition and repair can be initiated by blocking RNA polymerase II, assisted by the Cockayne’s syndrome genes ERCC8 and ERCC6.

We at Novus Biologicals have 127 antibody products devoted to the area of mismatch repair. They are of importance in certain cancers specific cancers. For example, MLH1 is frequently mutated in cases of hereditary nonpolyposis colon cancer. It is a homologue of the E. coli mismatch repair gene mutS.

Mismatch repair proteins recognise and repair incorrect insertions and deletions of base pairs, such as guanine–thymine or adenine-cytosine. These mismatches can occur through replication errors, oxidation, methylation, spontaneous deamination and as intermediates of homologous recombination (HR).

Mismatch repair involves excision of the faulty base pair, replacing it with the correct sequence. It is often instigated through NER, though HR and BER (base excision repair) are also involved. BER antibodies are often used in brain cancer studies – BER is the main mismatch pathway in the brain.