Archive for July, 2010

Chinese cancer study reveals three new genes for nasopharyngeal carcinomas

Friday, July 30th, 2010

A large percentage of the products in our antibody catalog are used for cancer research. Some oncogenes are expressed in several types of tumour, while others are quite specific. For example, there are several products on our antibody database which target genes specific to nasopharyngeal carcinomas (NPC), such as UBAP1 and MMP9. Recently, a Chinese cancer study, which used no fewer than 10,000 volunteer subjects, uncovered 3 new susceptibility genes for NPC.

NPC is a cancer which attacks the epithelial cells of the nasopharynx, the area of the upper throat located behind the nose. It is particularly prevalent in the Guangdong it is also known as Cantonese Cancer for this reason. The study, led by Dr Liu Jianjun and Professor Yi-Xin Zeng, performed a genome-wide association study to identify genetic risk factors specific to the South Chinese population, using 5,000 known sufferers and 5,000 controls. Antibody assays of tissue samples revealed that genetic HLA (human leukocyte antigen) variation, plus genetic alterations of the TNFRSF19, MDSIEVI1 and CDKN2A/2B genes could significantly increase the risk of developing NPC.

Human leukocyte antigens are cell-surface glycoproteins which, together form the major histocompatibility complex in humans. Formed of three classes, each with specific functions, they encode a wide range of proteins (including other genes) and are essential for immune function. They are present on almost all nucleated cells. We at Novus Biologicals have over 450 products on our antibody database targeting HLA proteins.

HLA genes were known to have a link with NPC as far back as 1974. However, low sample numbers and the range of genetic markers available hampered further identification. This latest study has overcome this to a large extent, allowing antibody suppliers like us to further enhance our NPC range.

Real-time cell analysis throws new light on G-protein coupled receptor function

Thursday, July 29th, 2010

The G-protein coupled receptor (GPCR) family constitutes one of the largest protein families in the mammalian kingdom, with over 800 proteins so far discovered. Our GPCR antibody catalogue covers all 6 classes, with antibodies raised against Metabotropic Glutamate/Pheromone receptors; Rhodopsin-like receptors; Secretin receptors; Fungal Mating Pheromone receptors; cAMP receptors and Frizzled/Smoothened receptors. The majority are of the Class A (Rhodopsin-like) class.

GPCRs are a major focus for antibody suppliers. They are fundamental to many life processes, enabling cells to react to changes in their environment by activating intracellular signalling pathways (generally the cAMP or phosphatidylinositol signal
transduction pathways), or by binding extracellular molecules (ligands.) Ligands include hormones, odours, neurotransmitters and light-sensitive chemicals.

GPCRs are involved in most sensory systems, and can affect behaviour and moods by interaction with chemicals like dopamine and serotonin. In vivo studies have shown that modulation of GPCR activity can have a therapeutic effect in areas as diverse as neurology, immunology, cardiology, and oncology. We at Novus Biologicals provide GPCR antibodies for research into a wide range of clinical and physiological areas.

Scientists are constantly looking for ways to improve their antibody protocols, in terms of reagents, methodology and equipment. Recently, a new real-time cell analysis method using impedance-based signals (the Roche xCELLigence System) was used to assay a wide range of GPCRs in primary and tumour cells.

Unlike traditional assays using engineered cell lines, the RTCA method allowed multiple proteins to be studied simultaneously, in a near-native environment at normal expression levels. It can be used with both labelled and unlabelled antibody reagents, and represents a great breakthrough in biomolecular science.

The role of LC3 within the autophagic pathway

Tuesday, July 27th, 2010

We at Novus Biologicals have a broad antibody database covering the area of autophagy – over 1400 reagents in total. Autophagy is bulk degradation of cytoplasmic components – literally, self-digestion of the cell. Double-membrane vesicles, called autophagosomes, carry unwanted cell components to the lysosomes within an inner autophagic membrane. They then fuse liberating the autophagic body and its contents into the lumen of the vacuole for degradation.

This is a complex process involving at least 16 proteins. However LC3 is the only one known to form a stable association with the membrane of autophagosomes. It is known to exist in two forms: LC3-I, which is found in the cytoplasm and LC3-II, which is membrane-bound and is converted from LC3-I, to initiate formation and lengthening of the autophagosome. It differs from LC3-1 only in the fact it is covalently modified with lipid extensions (lipidation) and has undergone removal of a short amino acid. Detection of this conversion, using LC3 antibodies, is a useful biomarker to detect autophagy – in fact, it’s the only reliable one.

LC3 is known to use post translational modifications (PTMs) during the autophagic response. PTM, the chemical modification of proteins following translation, is a late stage in protein biosynthesis and can radically affect protein function. The mechanism by which LC3 utilises post translational modification is crucial to understanding how the autophagic process works, and how it influences certain diseases such as cancer.

Featured autophagy products in our antibody catalog include conjugated rabbit polyclonal anti-LC3, ATG5 and anti-HIF-1 alpha antibodies; LC3B and Bcl2 [phospho Thr56] antibodies, and 4 new SDIX reagents.

New DLL4 vaccine could make breast tumours a thing of the past

Monday, July 26th, 2010

We at Novus Biologicals have a large antibody database devoted to signalling pathways. These underpin every area of molecular biological research, including cancer. Among our cell signalling antibodies is one targeted to DLL4 (Delta-like protein 4). DLL4 is a homologue of the Drosophila delta gene, known to encode DSL-domain ligands on the Notch signaling pathway. It has been shown to play an important role in regulating the growth of new blood vessels, including those of malignant tumours.

For a tumour to grow beyond a few millimetres in size, new blood vessels must be grown, or the tumour cells will be starved of nutrients and oxygen. DLL4 plays an important role in this. When a new blood vessel begins to sprout from an existing one, DLL4 is expressed in the tip cells. This blocks neighbouring cells from forming new capillaries of their own.

If DLL4 expression is blocked in tumour cells, there is a pronounced increase in the development of new, but non-functioning blood vessels. This slows the tumour’s growth. Recently, a group at the Karolinska Institute developed a DNA-vaccine active against DLL4 in mouse breast tumours. Vaccination resulted in an antibody response against DLL4, slowing tumour growth. When examined, the tumours were found to have a tightly-packed mass of non-functioning blood vessels, resulting in poor blood supply and nutrient and oxygen starvation. There appeared to be no other ill effects.

This study crosses into many of the areas covered by our antibody catalog, including hypoxia and apoptosis. Evidently, much research still needs to be done, but it is hoped that a vaccine for human breast cancer patients in one step closer to reality.

Conventional hybridoma development versus plasmid antibody technology

Friday, July 23rd, 2010

Most reagents in antibody catalogs are produced using traditional immunisation technology, using peptides or other immunogens isolated and purified from cell lysates.

Typically, mice are immunised with the antigen in groups, varying the mouse strain and antigen dosage. Pre-immune and immune sera are evaluated and mice showing the best immune response are selected for somatic cell fusion. This is the fusion of antibody-producing lymphocytes with proprietary myeloma cells from a non-antibody producing source, creating a hybridoma.

The hybridoma cells then proliferate, producing a continuous supply of monoclonal antibodies. Hybridomas producing the best performing Abs are then cloned, increasing the likelihood of monoclonality. Although it is the standard technique for monoclonal antibody production, it often results in a poor yield when difficult target antigens are used. Problematic immunogens include transmembrane, conserved, and smaller sized proteins.

Recently, we at Novus Biologicals introduced a totally new concept to our antibody database: genomic antibody technology, or GAT. Using this technique, immunoglobulins can be produced targeted to the most complex of immunogens.

Genomic Antibody Technology avoids the use of native-sourced antigen entirely. Instead, the amino acid sequence is used, supplied as electronic information. The sequence is biosynthesised and placed in a proprietary plasmid vector (DNA able to exist outside the chromosome.) The plasmid is injected into specific tissues of a host animal (i.e. transfection). The cells take up the vector and proceed to synthesise and secrete the immunogen, which is immediately recognised by the immune system. The result is production of highly specific monoclonal antibodies in response.

GAT antibodies are an exciting new addition to our antibody catalogue, solving many of the problems associated with hybridoma technology and streamlining the whole process.

How does Genomic Antibody Technology work?

Wednesday, July 21st, 2010

We at Novus Biologicals recently added novel GAT (Genomic Antibody Technology) reagents to our antibody catalog, following the formation of a partnership with SDI, creators of the technique. SDI’s GAT antibodies represent a totally new way to think about protein immunogens.

GAT utilises bioinformatic analysis to select the optimum amino acid sequence for the target protein. The science of bioinformatics, in which statistical computer programs are used to extract biological information from electronic data provided, has become enormously sophisticated since it was first developed in the 1970s, and is the perfect tool for Genomic Antibody Technology. SDI’s HAWK program chooses the optimal 100 aa sequence to create a native antigen.

Once selected, the immunogen is synthesised in vivo by encoding plasmids (DNA molecules existing independently of chromosomal DNA, typically sourced from bacteria) and then injected them into a host animal via transfection. In response, highly specific antibodies are produced, targeted to the immunogen in its natural state.

Large proteins are often preferred in immunoassays because they yield higher numbers of epitopes, are more likely to contain exposed surface epitopes and are more likely to fold into their native structure. GAT antibodies recognise naturally folded, larger protein sections, selected using advanced bioinformatic analysis in chains of up to 100 amino acids.

It is critical that when antibodies are raised, they recognise the native conformation of the target protein, and have a high affinity for multiple epitopes. However, the traditional method of purification and isolation of proteins from cellular extracts often yields poor results – especially in difficult immunogens like transmembrane receptors. Success will be far higher with our GAT antibody database.

The benefits of Genomic Antibody Technology

Monday, July 19th, 2010

We at Novus Biologicals have an extensive antibody database covering all areas of biological research. Recently, we dramatically increased the scope of our antibody catalogue by the addition of over 800 antibodies created by Genomic Antibody Technology (GAT), the result of a new partnership with SDIX (Strategic Diagnostics, Inc.), who formulated the technique. As we begin creating novel GAT reagents of our own, this database will expand still further – there are many GAT antibodies still to be created.

Genomic Antibody Technology has many advantages over conventional immunization techniques, using a totally novel method in which immunoglobulins are produced using only the DNA sequence of the target antigen. The need for recombinant proteins, peptides and natively sourced antigens is eliminated. Not only does this make the entire process of producing antibodies time and cost effective, it also eliminates the possibility of protein denaturation, a common problem during expression and purification.

Genomic Antibody Technology is not limited to small immunogens. The immunogens to which the antibodies will be targeted are expressed in vivo, meaning large proteins of up to 100 amino acids can be used, with good native configuration which is presented direct to the immune system. This leads to the expression of high-performing, highly specific immunoglobulins.

In addition to the reagents in our antibody catalog, we at Novus Biologicals work with SDIX to provide custom antibodies to specific antigens supplied by our customers. If you are, for example, studying a specific tumour cell line these proteins can be in short supply or easily denatured. Because custom antibody production using GAT only requires you to supply the amino acid sequence, this is no longer a problem.

Ago2 antibodies and dicer-independent biogenesis of miRNA

Friday, July 16th, 2010

Ago2, also called eIF2C2, antibody is one of 37 reagents targeted to the Argonaute protein family that we at Novus Biologicals have in our antibody catalogue. Argonaute proteins are encoded by genes which play an important role in regulating the control of gene expression by miRNA (microRNA). Recently, a new antibody study showed that the role of Ago2 may be to help generate production of miRNA, rather than simply moderate its function.

Micro RNAs are short, highly conserved RNA molecules that regulate gene expression by binding to complementary 3’ UTR (three prime untranslated regions) of the relevant messenger RNA (mRNA). They were first described in 1993, but it was not until the 2000s that they were recognised as a distinct bio-regulatory group.

In recent years, a number of antibody studies have shown the fundamental role miRNAs have in controlling biological processes via up and down regulation of gene expression. They are widely distributed in cells and tissues, with over 1000 human miRNA molecules each controlling multiple genes. Studies have shown that miRNAs are key regulators in a number of cellular processes, including cell proliferation; apoptosis and early development.

Ago2 is thought to work with the dicer enzyme to shorten miRNA, creating the “mature” form of the molecule. However, the recent study, conducted by Hannon et al, showed a separate pathway, where Ago2 cleaved and shortened pre-miRNA independently of dicer. The study, performed in embryonic mice, showed Ago2 was essential for embryonic development, and pointed to a conserved mechanism of microRNA biogenesis directly dependent on Ago2 catalysis.

Overexpression of miRNA has been linked to lymphocytic leukaemia and other cancers. They are thought to be as important as transcription factors in disease research, providing great potential for antibody suppliers like us at Novus Biologicals.

Role of RASSF1A in death receptor-dependent apoptosis

Wednesday, July 14th, 2010

Death-receptor apoptosis, or cell death, is essential for cellular growth regulation; its disruption is expressed in a variety of cancers. We at Novus Biologicals are one of the leading antibody suppliers for apoptosis and cancer research groups, and therefore have a large antibody database targeting death receptor proteins.

RASSF1A (Ras association domain family protein 1A) is a tumour-suppressor gene known to play a key role in death-receptor apoptosis. It is expressed in a range of tissues, among them kidney, pancreas, spleen, thymus, brain, lung, liver, prostate, testis and peripheral blood leukocyte cells. Inhibition or mutation of this gene is linked to a variety of cancers.

RASSF1A expression is inhibited when CpG islands (areas where there are high numbers of cytosine-phosphate-guanine or CpG sites) are hypermethylated. Hypermethylation of the RASSF1A promoter is linked to the development of various tumours. Encoded protein is known to induce cell cycle arrest by inhibiting cyclin D1, and it also interacts with XPA, a DNA repair protein. However, the activation process is unclear.

Recently, Ghazaleh et al shed new light on its mechanism of action, demonstrating the important role of 14-3-3 proteins in regulating RASSF1A-initiated apoptosis.14-3-3 (so named because of its migration patterns in antibody assays) is a regulatory family of proteins, which binds to a wide range of signaling proteins.

The study showed that stimulation with the tumor necrosis factor TNFalpha, or TNFalpha related apoptosis inducing ligand (TRAIL) blocked the RASSF1A/14-3-3 binding process, following which RASSF1A bonded to MAP1 (Modulator of Apoptosis-1). 14-3-3 bonding required basal phosphorylation by GSK3 beta at three critical serine sites. Antibody assays also revealed that mutation of these serines led to loss of 14-3-3 association and subsequent recruitment to MAP1.

Explaining Genomic Antibody Technology

Monday, July 12th, 2010

Recently, we at Novus Biologicals became partners with Strategic Diagnostics Inc (SDIX), one of the largest antibody producers in the US. The objective was to extend our antibody database by over 800 of SDIX’s polyclonal cancer antibodies, created by their unique Genomic Antibody Technology (GAT) system, as well as creating novel GAT immunoglobulins against targets specific to our own antibody catalogue. However, what exactly is GAT, and why is it so superior?

With ever more sophisticated assay testing and data retrieval techniques becoming established in the life sciences arena, it’s obvious the reagents must be of a similar quality. In cancer studies especially, it is alterations in protein structure which scientists are looking for. To separate potential oncogenes from normal, non-cancer causing proteins, it’s important that the targets for which antibodies are developed are as near their natural state as possible.

Using Genomic Antibody Technology, a large variety of antibodies targeted to antigens in their naturally folded forms has been developed. This is because the antibodies are produced in vivo so that they are able to develop and form accurately and with their natural functions. As more proteins are discovered, GAT antibodies can be added to our database. Creating a system by which any immunoglobulin can recognise a protein in its natural folded state is a tremendous advantage to clinical research. Proteins that were previously of restricted value can now be used in highly valuable assay areas such as chromatin immunoprecipitation (ChIP), sandwich immunoassays and flow cytometry.

Another advantage to GAT is its ability to create reagents against difficult target antigens, such as highly conserved nucleic acid sequences. The development of Genomic Antibody Technology is a tremendous step forward, considerably enhancing an already extensive antibody catalogue.