Archive for March, 2010

Weekly Highlights of Novus Antibody Lab

Wednesday, March 31st, 2010

The end of March has proven to be a busy time for the Novus antibody lab. Seven new antibodies were launched, numerous antibody conjugations completed, and continuous quality control testing of new antibody lots.

Two of Novus’ newly released products are c-Myc antibodies: clone 9E10 and clone 9E11. c-Myc is a transcription factor that is activated in a variety of tumor cells, and plays a critical role in cellular proliferation, differentiation, apoptosis and cell cycle progression. It is also a commonly used epitope tag engineered onto the N- or C-terminus of a protein of interest so that the tagged protein can be analyzed and visualized using immunochemical methods. Clone 9E11 is made to a synthetic peptide (AEEQKLISEEDL) conjugated to KLH, and is also available conjugated to Biotin, HRP, DyLight 488 and DyLight 549. Clone 9E10 is also available conjugated to Biotin, HRP, DyLight 488, DyLight 549 and DyLight 649.

Novus also released a RNA polymerase II Antibody (clone 4H8), PCNA Antibody (clone PC10), VEGF Antibody (clone VG1) and Cytokeratin 1 Antibody (clone LHK1). All new products added to the Novus antibody catalog within the past month can be viewed here.

The Novus antibody lab team conjugated several antibodies over the past week. The PMP22 Antibody (clone Hu1) was conjugated to biotin, and Blimp-1 Antibody (clone 3H2-E8) and Carbonic Anhydrase IX Antibody were both conjugated to HRP, to name just a few. A new lot of Novus’ ABCG1 Antibody (cat # NB400-132) was QC tested in Western blot on Raw 264.7 Whole Cell [T0901317 treated and untreated lysates] and a new lot of the TYRO3 Antibody was tested on mouse brain lysate achieving a clear band at 96kDa. Continual QC testing of new antibody lots assures that all of Novus’ antibodies are of the highest quality and specificity.

Disruption In Circadian Rhythms Via Clock Gene Can Lead To Cancer

Tuesday, March 30th, 2010

We at Novus Biologicals have a number of products in our antibody catalog covering the area of circadian rhythms. Disruptions of the “biological clock” mechanism are known to cause a range of disorders.

Clock (circadian locomotor output cycles kaput) was identified in 1997 as being one of the proteins encoding the PAS (PER-ARNT-SIM) transcription factor group of proteins. These proteins control the basic helix-loop helix (bHLH) mechanism, part of the circadian biofeedback loop. Clock antibodies have revealed its role in the development of cancers.

In vivo, Clock is dimerized to create the BMAL1-CLOCK complex. In mammals, this complex regulates cryptochrome genes such as Cry1 and Cry2, and Period genes such as Per1 and Per2. These genes regulate expression of Clock, thus forming a biofeedback loop. Expression of BMAL1-CLOCK genes is controlled by methylation.

Although clock is implicated in various disorders, it has rarely been reported in cancer. However, in 2009 Taniguchi et al. showed that hypermethylation could block BMAL1 completely, thus preventing the clock mechanism working. This was linked to the disrupted circadian patterns seen in various haematologic malignancies.

Now, a new study by Yale University has shown significantly less methylation in the promoter region of the clock gene in breast cancer patients. Clock has been shown to be over-expressed in breast tumor cells, particularly oestrogen and progesterone receptor-negative tumors. It was suggested genetic and epigenetic mutations of the clock gene were the cause.

We at Novus Biologicals recently launched a new rabbit polyclonal anti-CLOCK antibody. This will be used to research hitherto unexplored areas – such as the possibility that changes in light cycles can promote cancer formation in night workers.

The Use Of Embryonic Stem Cell Markers In Human Disease Research

Thursday, March 25th, 2010

We at Novus Biologicals are constantly creating new stem cell lines for a variety of bioassays – they are an essential part of our antibody catalog. Although stem cells are derived from many types of tissue, both adult and human, there is much controversy over their use.

The embryonic stem cells we supply are derived from animal, not human embryos. They are fertilized in vitro, and harvested as blastocysts, which are a hollow balls of cells that are a few days old. From these, we remove the blastocoels – the embryonic component. This is cultured in the lab.

Embryonic stem cell culture is quite inefficient, and so subculturing techniques are used. Once a cell line has become established, millions of ESCs can be yielded, often for years. This provides continuity and traceability. Once ESCs have been cultured for six months without differentiation, they are termed pluripotent and have formed an embryonic stem cell line.

Stem cells are invaluable to cellular research, because they have the ability to grow indefinitely, and differentiate into many different cell types. Stem cells circulate throughout the body, but often in tiny amounts. To identify them, stem cell markers are used. Stem cell markers are receptors specific to stem cells. Once they are identified, antibodies can be created that tag on to them. Alkaline phosphatase is a common stem cell marker, Alkaline phosphatase antibody is used for its identification. Widely used as a marker in cancer cells, it is just one of many SCMs we at Novus Biologicals have in our antibody catalog.

The Role Of TNF Receptor Signalling In Chronic Cardiac Failure

Wednesday, March 24th, 2010

Tumor necrosis factor alpha has been shown to be important in the cellular response to chronic heart failure, with signaling taking place through the receptor isotypes TNFR1 and TNFR2. We at Novus Biologicals have a large number of TNF-related antibodies in our database. Many of today’s studies are based on information gained by Defer et al. in 2007.

The study set out to further define the TNFR1/2 signaling pathways in rat cardiac myocytes, and used a range of antibody preparations. These included phosphorylated rabbit polyclonal antibodies (including phospho-p44/p42, phospho-MSK1 and phospho-cPLA2); monoclonal anti-cPLA2 antibodies; rabbit polyclonal actin antibody; Peroxidase-conjugated goat anti-rabbit and anti-mouse IgG, and FITC-conjugated donkey anti-mouse antibody.

Cardiac myocytes were isolated from treated and control rats, and a range of assays were performed. These included measurement of [Ca2+] levels and cell fractional shortening; Measurement of ROS production and measurement of cell survival using TNFR1 or TNFR2 antibodies +/- TNFα.

Immunoblot analysis was performed to visualize peroxidase activity, using conjugated goat anti-rabbit or anti-mouse antibodies. IHC analysis of myocytes was also performed, incubating first with mouse monoclonal cPLA2 antibodies, and then FITC-conjugated donkey anti-mouse antibodies. Laser image scanning was also performed of TNFα, +/- anti-TNFR1 or TNFR2 Mab antibodies.

The results showed that TNFR1 activated production of reactive oxygen species, and had both positive and negative effects on calcium handling, fractional shortening and cell death. In contrast, TNFR2 played a cell-survival role by inhibiting ROS production and apoptosis.

Treatment with neutralizing TNFR1 antibodies revealed a positive TNFR2 effect on cell fractional shortening and [Ca2+] handling. There was a close interplay between the TNFR1 and TNFR2 pathways. Although TNFR1 signaling predominated, it was under the mediation of TNFR2, which played a limiting role.

New Study Uncovers Role Of CD44 Receptor In Cell Survival

Tuesday, March 23rd, 2010

The CD44 family comprises a number of immunologically similar glycoproteins, which are expressed on the membranes of endothelial, mesenchymal, leukocyte and hepatocyte cells. The CD44 family has a number of functions. CD44 antibody assays have shown some that some isoforms play a role in abnormal gene splicing in human cells. Understanding this splicing mechanism is the key to many cancer research programs, hence we at Novus Biologicals have a broad range of conjugated and non-conjugated CD44 antibodies in the cancer section of our antibody catalog.

In immunobiology, CD44 is a valuable marker for memory cells, since B-cell and T-cell activation in the immune response leads to high expression of CD44. The protein is bound to hyaluronic acid in the extracellular matrix. When an antigen triggers the immune response and activates the T-helper cells, CD44 activity is increased by upregulation. However, despite its usefulness as a marker protein, its role in the immune response has remained elusive.

Recently, scientists at the Sanford-Burnham Medical Research Institute discovered that CD44 can assist a specific subset of T-helper cells, Th1, to actualise immunologic memory. The study showed that in the absence of CD44, Th1 cells tagged to an influenza virus fragment underwent rapid autophagy, thus blocking the development of immunologic memory.

Conducting IHC analysis using Fas antibodies and CD44 antibodies, the team further showed that CD44 played an anti-apoptotic role when cell death was initiated by the Fas receptor. The study also demonstrated that anti-apoptosis could be modulated by antibodies capable of regulating CD44 signaling.

T-cells can have pathogenic effects on the body by overexpression of cytokines. It was suggested CD44 may have a therapeutic role to play in this.

Conjugated Antibodies to Enzymes, Fluorochromes and More

Thursday, March 18th, 2010

Conjugated antibodies are a useful research tool in a variety of applications, ranging from Western blot to flow cytometry. We at Novus Biologicals offer many primary antibodies conjugated to enzymes such as HRP, fluorochromes such as FITC, and others including biotin and cyanine dyes.

Our antibody lab is always busy with custom antibody conjugation projects. This past week the lab conducted numerous conjugations, including a LDL Receptor antibody to biotin, a HMGB1 antibody to HRP, an Actin antibody to DyLight 488, and a CD133 antibody to DyLight 549.

When asked about the difference between conjugating an antibody to HRP, biotin and DyLight dyes, one of the Novus lab technicians, David Kuroki, explained just one of the variances:

“Dialysis is used to remove primary amines and any sodium azide that may be present. For HRP and Biotin the dialysis buffer is PBS, pH 7.4. For the DyLight fluors the dialysis buffer is 50 mM Sodium Borate, pH 8.5. There is also a difference in incubation times, 30 minutes for Biotin, 1 hour for DyLight fluors and 3 hours for HRP.”

Kuroki also mentioned that antibody conjugations can take anywhere from 3 to 6 hours, depending on the specific conjugate. First the antibody is quantitated for a reference point, then dialyzed into the appropriate buffer. Next the antibody is concentrated, if necessary, and then quantitated again to determine recovery efficiency. Following the completion of these steps, the actual conjugation takes place.

Browse the conjugated antibodies that we offer by visiting our primary antibody page and using the conjugate filter on the bottom, left hand side of the screen. In addition, easily label any antibody with only 30-seconds hands-o time using our Lightning-Link Antibody Labeling Kits.

Adropin – A Cure For Greed?

Wednesday, March 17th, 2010

We at Novus Biologicals have a large number of products in our antibody database which are used for metabolic research. A new Adropin antibody is a recent addition, and is used in obesity research. Although not life-threatening in its own right, obesity – as we all know – can lead to a host of more serious illnesses including heart disease, stroke and diabetes.

The role of adropin is to regulate lipid metabolism and control glucose homeostasis. It is encoded by the ENHO (Energy Homeostasis Associated) gene, and is found in the liver and brain. Studies have shown the protein levels rise in response to the intake of fatty foods, and fall during fasting. This makes adropin one of the first proteins proven to react directly to dietary fat intake.

Now, it has been suggested adropin could hold the key to preventing onset of diabetes. Obese mice are normally unable to metabolize adropin. However, genetically obese animals that were given it in dosage form responded better to insulin and had less fatty livers than the controls. The benefits were seen long before they began losing weight. A synthetic version of the peptide gave similar results to that derived from in vivo sources.

These results suggest that adropin could be a useful therapeutic tool, but there is still a lot to learn. For example, since it is produced in both the liver and the brain, it would be interesting to see if there is a connection. Recently, we at Novus Biologicals, antibodies suppliers tested a new batch of rabbit polyclonal anti-adropin antibody in our lab, using human brain lystate as the substrate. It will be interesting to see if obesity really is “all in the mind.”

Stem Cell Markers for Core-ESC Like Genes

Tuesday, March 16th, 2010

Embryonic stem cells (ESCs) and their corresponding marker antibodies are often used in cancer research, since cell-renewal is a feature shared by both ESCs and cancer cells. The drawback is that there is no clear evidence of a transcription program common to both cell types. However, in a study (Wong et al. 2008), it was described how comparison of human and murine ESC-like gene modules had isolated a catalog of 335 genes, which could be used as a “core ESC-like gene module” for tumor studies.

The publication described how a gene map was constructed to analytically relate the transcriptional programs of adult tissue stem cells, embryonic stem cells and cells from human cancers. The map revealed two predominant gene modules which correlated adult tissue stem cells with ESCs.

Tumors with an embryonic stem cell-activated signature are associated with higher mortality rates and faster and more frequent progression to metastasis. The ESC-like transcriptional program similarly activated in human epithelial carcinomas, and showed a pronounced prediction of cell death and metastasis.

In human epithelial keratin-cells mutated by I kappa B alpha and Ras, c-Myc increases the incidence of oncogenic cells 150 times, leading to tumor formation. In antibody studies, the oncogene c-Myc was shown to reactivate ESC-like transcription in both normal and tumor cells. The study suggested that establishing a transcriptional program, using core-ESC like genes and antibody markers in adult human cells may be a useful way to induce the pathologic features of tumor cells for in vitro research.

We at Novus Biologicals have over 3000 products in our core-ESC antibody database. They are widely used for study into cellular processes and cancer formation.

Novel Antibody Released for the Study of Cholesterol Homeostasis

Friday, March 12th, 2010

The Novus Product Development Team is excited to announce the launch of a new antibody target not currently available by any other antibody suppliers. The two new antibodies, a human TMEM97 antibody (NBP1-30436) and mouse TMEM97 antibody (NBP1-30437) are of particular interest as TMEM97 is implicated in several cancers, including breast, pancreatic, colorectal and ovarian cancers. In an article published in Cell Metabolism this past July, TMEM97 was also identified as one of 20 genes that are functional regulators of cellular cholesterol homeostasis. Novus’ new human TMEM97 antibody has been successfully tested in both Western blot and immunocytochemistry. The mouse TMEM97 antibody is also useful for Western blot analysis and will be tested in immunocytochemistry within the next week.

In addition to this new product launch, the Novus antibody lab has also been busy with antibody conjugations. A few recently conjugated antibodies include BrdU antibody (NB500-235) to biotin and DyLight 488, Caveolin 1 antibody (NB110-74687) to Biotin, and Jumonji antibody (NB100-2214) to DyLight 649.

Novus’ laboratory technicians have also had their hands full with the QC testing of newly purified antibody lots. A new lot of LC3B antibody (NB600-1384) was tested in human brain lysate and achieved a specific band at 14kDa, consistent with previously purified lots of this antibody. The Tyro-3 antibody (NBP1-28635) was also QC tested on human brain lysate which produced a clear band at 96kDa. One of Novus’ embryonic stem cell markers, an anti-SOX2 antibody (NB110-37235), was also tested in Western blot. The SOX2 antibody was tested on mouse brain lysate where a strong signal at 39kDa was visualized.

The Novus antibody lab has also been busy with new antibody projects. A new autophagy-related antibody is currently in production; more details are expected to be released within the coming month. This new antibody complements Novus’ broad line of over 800 autophagy antibodies.

Activation of NF-Kappa B via Coordination of cIAP, TRAF and Kinase NIK

Thursday, March 11th, 2010

Recent antibody studies have suggested that nuclear factor κB-inducing kinase (NIK) is inhibited through proteasome-controlled degradation regulated by TRAF/cIAP proteins. cIAP1 and cIAP2 are fairly recent apoptosis inhibitors and represent some of the newer products in our antibody catalog.

NF-kB (nuclear factor kappa-light-chain-enhancer of activated B cells) is found in practically all mammalian cells and is a transcriptional factor of DNA. It affects the cellular response to a range of stimuli, including free radicals, UV radiation and stress. It plays an important role in the immune response to pathogens, but disruption of the regulatory pathways can lead to cancer and other diseases.

The TNF receptor-associated factor (TRAF) family are adaptor proteins which link various cell receptors to MAPK signaling cascades, thus activating NF-kB. TRAF proteins are important transducers for the TNF and the IL-1/TLR receptor complexes. They play an important role in the adaptive and innate immune responses.

The C-terminals of TRAF2 and TRAF3 interact with receptor domains following ligand-induced oligomerization. They interact with a number of pro and anti-apoptosis proteins, meaning TRAF signaling can promote either cell death or survival. The cell signaling proteins in our antibody catalog are used for both pro and anti-apoptosis studies in both healthy and cancerous cells.

Recent IHC assays showed that NIK degradation was dependent on a TRAF3/NIK, TRAF2/cIAP1 and TRAF2/cIAP2 regulatory complex. cIAP1 and cIAP2 appeared to play redundant roles in NIK degradation, as deactivation of both proteins was required for non-canonical NF-kB activation and B-lymphocyte survival. The NIK pathway is tightly regulated, meaning a single gene is enough to reverse lethal TRAF deficiency.

Our antibody catalog at Novus Biologicals is constantly being updated to reflect new signaling pathway findings.