Breast Cancer and RAD51L1 Antibodies

January 27th, 2012

In the United States, breast cancer is one of the most common cancers and the second leading cause of cancer related deaths in women. According to the American Cancer Society’s most recent estimates for breast cancer in the United States, there are about 200,000 new cases of invasive breast cancer, 60,000 new cases of carcinoma in situ (CIS),  and approximately 40,000 deaths from breast cancer this year.

A predisposition to breast and ovarian cancer has been linked to mutations in the BRCA1 and BRCA2 genes.  In cells where the BRCA1 and BRCA2 genes are defective, there are indications of gross chromosomal rearrangements and breakage.  Antibody studies have shown that the RAD51L1 protein specifically targets and fixes double stranded DNA breaks, which are the main cause of the genomic instability in these cells, via the RAD51-mediated DNA repair system (PMID: 15065660).

RAD51L1 also known as DNA repair protein RAD51 homolog 2, RAD51 homolog B, RAD51-like protein 1, RAD51L1, RAD51B, REC2, and R51H2, is a member of the RAD51 protein family and is involved in the early stages of the homologous recombination repair pathway.  Homologous recombination occurs before the cell enters mitosis; during and shortly after DNA replication when sister chromatids are present.  The 5’ end of the damaged DNA molecule is cut away and the open 3’ end, where RAD51L1 binds and forms a helical nucleoprotein filament, then invades a similar or identical portion of an another intact DNA molecule (PMID: 19329439).  BRCA1 and BRCA2 work in conjunction with the RAD51 paralogues (RAD51C, RAD51D, XRCC2, and XRCC3), and some recombination proteins (RAD52, RAD54, RPA, and EVL) to create the RAD51L1 helical nucleoprotein filament (PMID: 19329439, PMID: 15065660). Studies have found that cells with defective BRCA genes fail to create RAD51L1 filaments, and therefore have a lowered cellular repair capacity that can lead to complications such as unregulated cell division and the formation of cancerous tumors (PMID: 15065660, PMID: 20610542).

Please see our website for antibodies, proteins and other reagents related to RAD51L1, homologous recombination, BRCA1, and BRCA2, or contact our technical support department (technical@novusbio.com) for additional details.

S100A6: Playing Roles in Cancer, Apoptosis & Transcription Regulation

January 26th, 2012

S100A6 antibodies detect a small calcium binding protein with 2 EF-hand structures and belongs to the S100 family. Calcium binding induces a conformational change of the protein which in turn permits its interaction with several target proteins. It is predominantly expressed in fibroblasts and epithelial cells and has been implicated in several cellular processes such as cell cycle progression, cytoskeleton rearrangement and exocytosis. It is a predominantly cytoplasmic protein however in the presence of calcium ions it might also associate with cell membranes.  Its vast array of biological processes may be due to the fact that it has the ability to bind a number of proteins and modulate their function by inducing conformation changes and/or interfering with post-translational modifications.

The upregulation of S100A6 has been reported in a number of tumors and linked to metastasis.  Recent studies have demonstrated a strong link between high nuclear expression of S100A6 and poor survival in pancreatic cancer patients.  It was concluded that up-regulation of S100A6 is an early event in pancreatic cancer development and that elevated levels of nuclear S100A6 influence the clinical outcome.

S100A6 has also been linked to apoptosis.  It has been shown to enhance the cell death rate of cells under apoptotic conditions when upregulated.  This is believed to be due to the interaction between S100A6 and Caspace 3 during which S100A6 is thought to modulate the transcriptional regulation of caspase 3 by increasing its promoter activity.

P53 appears to be another protein which S100A6 interacts with.  The presence of S100A6 results in higher p53 transcriptional activity which resulted in a higher cell susceptibility to apoptosis induced by hydrogen peroxide.  The binding of S100A6 to p53 did not however affect the ability of p53 to bind to DNA.

As S100A6 is further studies, more protein binding partners are bound to be discovered.  This may shed more light on the diverse roles that S100A6 plays in a vast array of cellular processes. Novus offers top quality S100A6 antibodies as well as lysates, recombinant proteins, RNAi and many other support reagents. Please contact our technical support department (technical@novusbio.com) for any additional details.

LXR Alpha, ABCA1 and Cholesterol Homeostasis

January 20th, 2012

LXR Alpha, also known as Liver X receptor Alpha is a 50KDa protein that belongs to the nuclear hormone receptor family located in the nucleus. It is specifically expressed in the liver, kidney and intestine; however it has also been found in the spleen, macrophages and the adrenals. All of these tissues play an important role in lipid metabolism. The primary role of LXR Alpha is to maintain cholesterol homeostasis in macrophages by regulating the genes involved in this. LXR Alpha activates the ABCA1 gene in macrophages which results in an increased movement of cholesterol to High-density Lipoproteins. The activation of the ABCA1 gene results in conditions such as atherosclerosis where there is an accumulation of cholesterol in the arteries. Macrophages which are present in this accumulation have the ability to gather oxysterols which then activate the LXR genes. The LXR genes then activate the ABCA1 gene. LXR Alpha is also known to enhance the expression of the inflammatory genes MCP1 and MCP2 along with many chemokines and cytokines. Not only does LXR Alpha play an important role in cholesterol homeostasis in the arteries but it also plays an important role in cholesterol homeostasis in Oligodendrocytes.

Here at Novus Biologicals, we have a wide range of LXR Alpha Antibodies that have been validated for most species and applications. They have all been thoroughly tested and we have some excellent validation data images on our datasheets. Please contact technical@novusbio.com with any questions about these or any other Novus reagents.

MAT2a, MAT2b, HIF-1 alpha: Roles in Liver Cancer and DNA methylation

January 19th, 2012

Methionine Adenosyltransferase II alpha, also known as MAT2a, is a catalytic subunit of methionine adenosyltransferase (MAT) and essential enzyme for the catalysis of the principle biological methyl donor, S-adenosylmethionine (SAM) from methionine and ATP. MAT2a’s heterotetramer structure is composed of 2 catalytic alpha subunits (alpha and alpha’)1. During development in the adult human liver, MAT2a and its gene products are progressively replaced by MAT1a during fetal liver development2. Increased growth and malignant degenerations has been observed in hepatocytes expressing increased levels of MAT2a and MAT2b2. It has been frequently observed in malignant liver transformation, that the expression of MAT1a is switched to MAT2a, which is believed to be an important factor in facilitating liver cancer progression3.

Recent studies have been conducted to investigate the potential interaction between MAT2a and HIF-1a as a mechanism being responsible for the change in genomic DNA methylation patterns found in liver cancer under hypoxic conditions. MAT2a was identified as a novel target gene that is transcriptionally regulated by HIF-1a. This provided the evidence needed to support that genomic DNA methylation is regulated by activation of HIF-1a and the up-regulation of MAT2a in hepatoma cells under hypoxic conditions3. Western blot and luciferase analysis in this study revealed a positive correlation between HIF-1a and MAT2a promoter activity expression in Hep3B cells after Hypoxic treatment. The use of siRNA to knockdown HIF-1a was shown to prevent the expression of MAT2a.  Furthermore, ChIP analysis revealed a significant increase in the binding of HIF-1a to the MAT2a promoter within hypoxic Hep3B cells3. The results from this study suggest that genomic DNA methylation is facilitated by the activated expression of MAT2a through HIF-1a under hypoxic conditions, due to the increase of MAT II activity and decrease of SAM production.

Novus offers many different MAT2a and HIF-1a antibodies to for your research needs. All Novus Products are covered by Novus’ 100% guarantee. Please feel free to contact our technical support staff for more information about the antibodies, proteins, lysates and other products that we carry.

References:

1. Wang Q, Liu Q, Liu Z, Qian Q, Sun Q and Pan D. Inhibition of hepatocellular carcinoma MAT2A and MAT2beta gene expressions by single and dual small interfering RNA. Journal of Experimental & Clinical Cancer Research 2008. 27:72. [PMID: 19025580]

2. Chen H, Xia M, Lin M, Yang H, Kuhlenkamp J, Li T, Sodir NM, Chen YH, Josef-Lenz H, Laird P, Clarke S, Mato J, and Lu S.  Role of Methionine Adenosyltransferase 2A and S—adenosylmethionin in Mitogen-Induced Growth of Human Colon Cancer Cells. Gastroenterology 2007; 133:207-218. [PMID: 17631143]

3. Liu Q, Liu L, Zhao Y, Zhang J, Wang D, Chen J, He Y, Wu J, Zhang Z, and Liu Z. Hypoxia Induces Genomic DNA Demethylation through the activation of HIF-1a and Transcriptional Upregulation of MAT2A in Heptoma Cells. Molecular Cancer Therapeutics 2011;10:1113-1123. [PMID: 21460102]

Vimentin Antibodies in Rheumatoid Arthritis & Cataracts Research

January 18th, 2012

Vimentin is a 57kDa type III intermediate filament (IF) protein that is the major cytoskeletal component of mesenchymal cells and the first to be expressed during cell differentiation. It plays a significant role in supporting and anchoring the position of the organelles in the cytosol and its dynamic nature is important for cell flexibility.  It is responsible for maintaining cell shape and cytoplasm integrity.

Vimentin has been implicated in a number of diseases.  It is frequently included in the primary panel of markers in the identification of mesenchymal tumors and malignant melanomas.  Some of the other markers used in that panel are CD45, cytokeratin and S-100 protein.

Antibodies against mutated and citrullinated Vimentin have become the forefront of Rheumatoid Arthritis (RA) recognition and diagnosis.  RA is a disorder which is difficult to recognize in the early period of disease manifestation.  There are 2 types of serological markers which are used for the diagnosis of RA:  antibodies to the Fc part of human IgG (rheumatoid factor) and antibodies to citrullinated protein/peptide antigens.  Antibodies against citrullinated Vimentin provide high specificity for the diagnosis of RA and have now been developed into a novel and rapid test system (American College of Rheumatology, 2008 Annual Scientific Meeting).

Vimentin has also been shown to play a key role in maintaining eye lens integrity.  A mutation, G596A substitution on exon 1, has been shown to cause an assembly defect in Vimentin which lead to cause cataract in the human patient.  The mutated vimentin formed an abnormal Vimentin cytoskeleton and caused an increase in the proteasome activity of transfected cells (Muller et al, 2009. Human Molecular Genetics).

Taken in summary, Vimentin and its implications in disease invite novel therapy approaches in the areas of cancer, rheumatoid arthritis and cataracts.  Novus Biologicals is at the forefront of the scientific research involved in these diseases and offers an impressive array of Vimentin antibodies and support reagents.

Breast Cancer and RAD51L1 Antibodies

January 13th, 2012

In the United States, breast cancer is one of the most common cancers and the second leading cause of cancer related deaths in women. According to the American Cancer Societ’s most recent estimates for breast cancer in the United States, there are about 200,000 new cases of invasive breast cancer, 60,000 new cases of carcinoma in situ (CIS),  and approximately 40,000 deaths from breast cancer this year (2).

A predisposition to breast and ovarian cancer has been linked to mutations in the BRCA1 and BRCA2 genes.  In cells where the BRCA1 and BRCA2 genes are defective, there are indications of gross chromosomal rearrangements and breakage.  The RAD51L1 protein specifically targets and fixes double stranded DNA breaks, which are the main cause of the genomic instability in these cells, via the RAD51-mediated DNA repair system  (PMID: 15065660).

RAD51L1 also known as DNA repair protein RAD51 homolog 2, RAD51 homolog B, RAD51-like protein 1, RAD51L1, RAD51B, REC2, and R51H2, is a member of the RAD51 protein family and is involved in the early stages of the homologous recombination repair (HRR) pathway.  Homologous recombination (HR) occurs before the cell enters mitosis; during and shortly after DNA replication when sister chromatids are present.  The 5’ end of the damaged DNA molecule is cut away and the open 3’ end, where RAD51L1 binds and forms a helical nucleoprotein filament, then invades a similar or identical portion of an another intact DNA molecule (PMID: 19329439).  BRCA1 and BRCA2 work in conjunction with the RAD51 paralogues (RAD51C, RAD51D, XRCC2, and XRCC3), and some recombination proteins (RAD52, RAD54, RPA, and EVL) to create the RAD51L1 helical nucleoprotein filament (PMID: 19329439, PMID: 15065660). Studies have found that cells with defective BRCA genes fail to create RAD51L1 filaments, and therefore have a lowered cellular repair capacity that can lead to complications such as unregulated cell division and the formation of cancerous tumors (PMID: 15065660, PMID: 20610542).

Please see our website for products related to RAD51L1, homologous recombination, BRCA1, and BRCA2 antibodies, proteins and other reagents.

Can Tubby make you Tubby?

January 12th, 2012

The TUB gene, which encodes for the protein Tubby, is evolutionarily conserved in human, chimpanzee, dog, cow, mouse, chicken, zebrafish, fruit fly, mosquito, C.elegans, and rice.

The gene derives its name from its role in metabolism; mice with a mutated tubby gene develop delayed-onset obesity, sensorineural hearing loss and retinal degeneration (a syndrome known as the autosomal recessive syndrome “Tubby”)

The first tubby gene was identified in mice, and proteins that are homologous to tubby are known as “tubby-like proteins” (TULPs).

The identification of a mutation at the tubby (Tub) locus in mice, led to the discovery of the homologous tubby-like proteins (TULPs). Tub and the genes that encode for TULPs (TULP1, TULP2, TULP3, and TULP4) form a novel, small gene family that plays an important role in maintenance and function of neuronal cells during development and post-differentiation.

All TULPs including TUB are classified as alpha and beta proteins and they share a common and characteristic tertiary structure that consists of a 12-beta stranded barrel packed around an alpha helix in the central pore.

The tubby protein is an upstream cell signaling protein common to multicellular eukaryotes which can bind the small cell signaling molecule phosphatidylinositol, which is typically localized to the cell membrane.

So can Tubby really make you Tubby?

The tubby protein is highly expressed in brain, especially hypothalamus where body weight regulation is controlled. The sequence of normal tubby includes putative tyrosine phosphorylation sites for SH-2 protein binding and a nuclear localization signal, while mutant tubby contains a 24 intron amino-acid insert substituted for 44 C-terminal amino acids.  In PC12 cells, insulin induces tyrosine phosphorylation. In vitro, tubby is phosphorylated by insulin receptor kinase, Abl, JAK2; and upon phosphorylation, tubby associates with the SH2 domains of Abl, Lck, phospholipase Cγ. The C-term region of tubby binds to phosphatidylinositol 4,5-bis-phosphate, which facilitates localization to the plasma membrane.  Receptor-mediated activation of Gαq releases tubby from the plasma membrane through the action of phospholipase C-B. This allows translocation of tubby to the nucleus where it plays a role in regulating transcription. Tubby proteins are also associated with neuronal differentiation and development, and when mutated, in mammals we observe obesity, retinal degeneration, and hearing loss.  In mice, mutations in tubby proteins are also known to affect life span and fat storage as well as carbohydrate metabolism.

Novus offers high quality Tubby antibodies for use on human or C. elegans in Western blot and immunostaining, as well as recombinant protein and RNAi controls.

NOX4 Antibodies in Diabetic Nephropathy Research

January 9th, 2012

Diabetic nephropathy (DN) is one of the leading complications resulting from chronic diabetes. It manifests as progressive renal failure caused by mesangial cell hyperplasia and fibrosis, and is one of the leading causes of terminal kidney disease (1). While the etiology is complex, an imbalance between pro- and anti-oxidant pathways in the kidney leading to an excess accumulation of reactive oxygen species (ROS) is believed to contribute in large part to the development of DN. The primary source of ROS in the context of DN are NAD(P)H oxidases, a family of enzymes that facilitate respiratory bursts in phagocytic cells and participate in ROS-mediated signaling in a variety of other cell types (2). In the renal environment, ROS such as superoxide anion and hydrogen peroxide are generated as intermediates in redox reactions but are quickly neutralized by enzymes such as superoxide dismutase and catalase.

Recent antibody studies have indicated that high glucose levels up-regulate NAD(P)H oxidases, altering oxidant homeostasis and contributing to vascular dysfunction observed in DN.  Sechi, et al. demonstrated that anti-oxidant enzyme activity was increased in the kidneys of streptozotocine-induced diabetic rats (3), and numerous other studies associate a rise in ROS with susceptibility to DN secondary to diabetes. Podocytes are especially vulnerable to the effects of high glucose levels; Piwkowska et al confirmed the pivotal role of the NAD(P)H oxidase, Nox4, in promoting damage characteristic of DN (4). This is not surprising, as Nox4 antibody research have suggested NOX4 is a master regulator of oxidative stress in previous studies, and is known to be constitutively expressed in the kidney (4,5). In addition to podocytes, mesangial cells show the pathological features of DN and elevated NOX4 activity subsequent to hyperglycemia (4). Considerable data has been amassed solidifying the potential of NOX4 as a therapeutic target for DN, and interesting evidence has emerged suggesting that herbal remedies may help treat DN by interfering with NOX4 (6).

Novus offers high quality NOX4 antibodies, guaranteed for most species and immunological applications. NOX4 antibodies are supplied in a variety of DyLight fluorescent conjugates and excellent staining data is available for each. Please contact our technical support department with any questions or for additional information.

  1. Ren G, Huynh C, Bijian K, Cybulsky A.  2008.  Role of apoptosis signal-regulating kinase 1 in complement-mediated glomerular epithelial cell injury.  Mol Immunol.  45:2236-2246.
  2. Touyz R, Briones A.  2011.  Reactive oxygen species and vascular biology: implications in human hypertension.  Hypertension Research  34, 5-14.
  3. Sechi L, Ceriello A, Griffin CA, Catena C, Anstad P, Schambelan M, Bartoli E.  1997.  Renal antioxidant enzyme mRNA levels are increased in rats with experimental diabetes mellitus.  Diabetologia  40:23-29.
  4. Piwkowska T, Rogacka D, Audzeyenka I, Jankowski M, Angielski S.  2011.  High Glucose Concentration Affects the Oxidant-Antioxidant Balance in Cultured Mouse Podocytes.  J Biol Chem  112:1661-1672.
  5. Jeong S, Kim S, Kwon T, YuK, Kim S.  2011.  Schizandrin prevents damage of murine mesangial cells via blocking NAD(P)H oxidase-induced ROS signaling in high glucose.  Food and Chemical Toxicology  (article in press).
  6. Morgensen C.  2003.  Microalbuminuria and hypertension with focus on type 1 and type 2 diabetes.  J Intern Med  254:45-66.
  7. Yi F, Zhang A, Li N, Muh R, Fillet M, Renert A, Li P.  Inhibition of ceramide-redox signaling pathway blocks glomerular injury in hyperhomocysteinemic rats. Kidney Int  70, 88-96. 2006.

Recent developments in p53 antibody research

January 6th, 2012

P53 is a stress-activated transcription factor, encoded by the TP53 gene. An important tumor suppressor, the protein mediates cellular growth and proliferation, regulating proteins involved in the stress-response. In p53 antibody studies, the protein has been shown to play an important role in the cellular response to DNA damage. Activation of p53 in response to stress stimuli may promote either cell cycle arrest followed by DNA repair, or apoptosis. We at Novus Biologicals are major antibody suppliers of p53 research products.

TP53 is one of the most widely mutated oncogenes, being linked to a large number of carcinomas. It is estimated around 50% of all tumors feature genetically modified or inactivated p53. Not surprisingly, the p53 antibody is widely used in cancer research. Although the function of the protein is to arrest the cell cycle in response to cellular stress, studies have shown that in its mutated form P53 may act as both a tumour suppressor and promoter.

Numerous studies have shown the p53 transcription factor plays transcriptional, posttranscriptional, and posttranslational roles, targeting multiple genes and microRNAs connected to a wide range of cellular activities apart from apoptosis and regulation of cell cycle arrest. In vivo and in vitro studies have shown p53 to be phosphorylated at multiple sites, by a number of different protein kinases, leading to an extensive database of p53 antibody products. Novus is able to supply conjugated and non-conjugated p53 antibody reagents targeting both the entire protein and specific epitopes, suitable for use in a wide range of normal and cancer cell lines.

Heat Shock Proteins: An Overview

January 4th, 2012

Heat Shock Proteins (HSPs) are a ubiquitous group of molecular chaperone proteins that have evolved unique mechanisms, within their host cells, to facilitate survival in hostile environments such as heat, oxidative (hypoxia), pH and cold. Under permissive conditions, the proteins are constitutively expressed and many have important or essential roles in the cell, including the protein export, regulation, turnover and the prevention of protein aggregation.  There are many classes of HSPs, which are divided into 5 families on the basis of their apparent molecular size and sequence homology:  Hsp100, Hsp90, Hsp70, Hsp60 and the small HSP’s (15-30kDa).

HSP100 proteins are amongst the most conserved within their chaperone family. The most characterised member within this group is the homohexameric toroid protein found in yeast, HSP104. Their major role is thought to be targeting mis-folded proteins and passing them through their central cavity, thus allowing the mis-folded protein to refold.

HSP90 has five isoforms to date including the cytoplasmic HSP90a and HSP90b. The HSP90’s are thought to regulate more than 200 proteins, covering many cellular processes within the cell. The list is constantly being updated however the most characterised so far are: HIF-1a, SRC, HER2, EGFR, BRAF, AKT, MET, VEGFR and FLT3.

Human cells contain several HSP70 family members and play many roles within the cell. Interestingly, they have been found specifically affecting the intrinsic and extrinsic pathway of apoptosis, by inhibiting the apoptotic mediator protein, Bax translocation. Jointly with its co-chaperone HSP40, HSP70 also blocks TNF-induced apoptosis and HSP70 also directly interacts with Apaf-1, consequently inhibiting the recruitment of procaspase-9 to the apoptosome and the resulting caspase-3 activation.

The HSP60 family of proteins generally comprise of a 7 or 8 sub-units, in a double ringed conformation. The family exhibit ATPase activity and it is thought that the binding and hydrolysis of ATP is essential for the reaction cycle and the result binding and release of partially or mis-folded substrate proteins.

The small HSPs are the most diverse and least studied family and have a low overall identity between fellow members of 20-30% and this is mainly found in the C-terminal half of the proteins. Alpha A Crystallin and Alpha B Crystallin constitute a large percentage of the protein found in the vertebrate eye lenses, function as chaperones by preventing protein aggregation and refolding.