New SERCA2 gene therapy fights heart disease

August 30th, 2010

While many of the proteins on our antibody database are studied in relation to their expression in diseases; others become therapies in their own right. This is the case with SERCA2 (Sarcoplasmic reticulum Calcium-ATPase 2 pump), which recently hit the headlines as a treatment for severe heart failure.

SERCA2 is an enzyme that acts as a magnesium-dependent pump in the heart, adult epidermis and smooth muscle tissue. It catalyses ATP hydrolysis and is critical in controlling the transport of Ca2+ between the sarcoplasmic reticulum and the cytoplasm. There are two distinct isoforms: SERCA2a is expressed in cardiac and slow twitch skeletal muscle, where it regulates the contraction/relaxation cycle. SERCA2b is expressed in adult epidermal and smooth muscle tissue, where it performs a similar role.

In June 2010, researchers at the Mount Sinai School of Medicine successfully developed SERCA2a into a new gene therapy, which in Phase ll clinical trials was proven to be safe and effective at reversing advanced cardiac failure. Released under the name MYDICAR, the drug was injected through a small catheter directly into the heart muscle of cardiac patients, where it was shown to dramatically improve the pumping of the heart and stimulate natural production of SERCA2a.

Calcium transport is critical to healthy heart function, and earlier antibody studies had already shown that heart failure could be caused by deficiency and/or changes in SERCA2a expression in cardiac myocytes. In May 2009, Jaski et al suggested replacement of SERCA2a by gene transfer could restore Ca2+ homeostasis and reverse many of the symptoms of heart failure. This has now been proven.

We at Novus Biologicals have 4 SERCA2a products in our antibody catalog, and 42 SERCA antibodies in total.

The latest research on IBR-type E3 ubiquitin ligases

August 27th, 2010

E3 ubiquitin ligases are standards in most antibody catalogues. These proteins are essential to the process of ubiquitination, which is expressed in protein pathways throughout the body and is often linked to disease states. It is widely used as a biomarker, with ubiquitin antibodies being widely used to identify the protein accumulations (inclusion bodies) which occur in conditions such as Alzheimer’s, Parkinson’s and Huntingdon’s disease.

The E3 ligases target specific proteins and are important in apoptosis and proteolysis. Their function is generally to assist polyubiquitination – the binding of multiple ubiquitin molecules to the same target protein – which is the signal for degradation (i.e. destruction) by the proteasome to begin. In combination with an E2 ubiquitin-conjugating enzyme, E3 ligases trigger the attachment of ubiquitin to lysine on their target proteins, via isopeptide bonding. Further ubiquitin molecules are then attached, one to the next.

The IBR (In Between Ring fingers) family of proteins are so-called because of a specific domain, found between pairs of ring fingers. Other names include C6HC and DRIL (double ring finger linked) domain. Also called RBR proteins, they are found in all eukaryotic organisms. They are thought to play an indirect role in regulating DNA transcription and protein quality control.

In recent times, it has been discovered that IBR-type ligases play a part in ubiquitination, often forming part of cullin-containing ubiquitin ligase complexes. Mutated forms of the Parkin IBR ligase is known to be expressed in familial forms of Parkinson’s disease. Recently, IBRDC2, one of the IBR-type E3 ubiquitin ligases covered by our antibody database at Novus Biologicals, was suggested to regulate apoptosis and Bax activation.

The value of Biosensis sandwich ELISA detection kits

August 25th, 2010

ELISA is a widely used technique for detecting concentration of proteins, using antibodies tagged with enzyme which react with dyes to produce a colorimetric or fluorescent signal. Sandwich Elisa takes this one step further, by pre-coating plastic wells with a known concentration of a “capture” antibody which reacts specifically to the antigen under test. A secondary antibody is then applied, tagged with an enzyme.

Recently, we at Novus Biologicals added a range of Biosensis ELISA kits to our antibody catalog, covering a wide range of antigens important to human disease research. Among them is human BDNF – a protein which was recently in the news as it appeared to have a stress-reducing and possible tumour-reducing effect in cancerous mice subjected to exercise.

BDNF, or Brain-Derived Neurotrophic Factor, is a member of the neurotrophin growth factor (NGF) family of proteins. Its function is to regulate neuronal differentiation and survival during embryonic development, and to regulate the plasticity and transmission of CNS synapses in the adult. Its expression is affected by stress, seizures, hypoglycaemia and other conditions, and it has been linked to CNS disorders like Alzheimer’s, depression, epilepsy and Parkinson’s disease.

Our human BDNF sandwich ELISA kit is a highly sensitive, reproducible method of determining BDNF levels in a range of sera. It contains a strip-plate of 96 wells, pre-coated with polyclonal human BDNF capture antibody. Addition of test sera creates an antibody-antigen complex. Biotinylated BDNF monoclonal detection antibody is then added, which also binds to the antigen (hence the “sandwich.”) ABC (Avidin-Biotin-Peroxidase) enzyme complex then binds to this second antibody. Finally, TMB peroxidase substrate reacts with the ABC component to create a detectable coloured dye reaction, the intensity of which is proportional to the concentration of BDNF in the samples.

Forkhead transcription factors and age-related DAF-16 studies

August 23rd, 2010

Orthologues are one of the classes of homologue genes. They occur in different species, but are linked by a common ancestral pathway. During evolution, they retain the same original function, irrespective of the species. Among the orthologues covered on our antibody database are those of the Forkhead transcription factor (FOX) superfamily of proteins.

Forkhead box O-class (FOXO) transcription factors are mammalian homologues of DAF-16, a protein which is known to be a lifespan regulator of the nematode worm Caenorhabditis elegans. Among the transcription factors we at Novus Biologicals have in our antibody catalogue are FOXO1, FOXO3a and FOXO4. In mammals they are linked to apoptosis, DNA repair, response to oxidative stress, metabolism and the regulation of the cell cycle.

FOX01a, 03a and 04 have been linked to tumourigenesis, having first been identified at human tumour chromosomal breaks. Antibody studies showed them to be targets of the PI3K/PKB pathway, which is known to play a part in oncogenesis. The discovery that DAF-16 was a target for PKB in C.elegans proved it to be a homologue of FOXO1a, FOXO3a and FOX04, which are similar in structure to DAF-16 and are its mammalian equivalent.

The FOX0 genes are known to play a part in age-related conditions such as cancer and diabetes. Recently, researchers at the University of Massachusetts Medical School discovered a new DAF-16 isoform, DAF-16d/f, which together with the isoform DAF-16a was shown to regulate longevity in C.elegans. DAF-16 is part of the insulin signalling pathway, and is at the centre of a complex network of protein pathways.

By performing anti-aging antibody studies on a relatively simple animal with genetic links to humans, it is hoped to uncover some of the causes of human age-related diseases.

The convenience of using ELISA kits

August 20th, 2010

The best antibody suppliers offer far more than just individual peptides and reagents. They also supply a range of antibody kits which contain everything the scientist needs to perform a particular experiment in one convenient package. We at Novus Biologicals have an extensive range of such kits, including purification, labelling, epitope tag, ATPase and ELISA kits. Recently, we added Biosensis 96-well ELISA kits to our antibody catalog. These are considered to be the most sensitive of all ELISA kits, offering a low number of blanks and highly reproducible results.

ELISA (enzyme-linked immunosorbent assay) is a standard immunological technique used to detect the presence of an antigen in a sample. An antibody targeted to the appropriate antigen is first fixed to a plastic surface (i.e. a well) and a solution containing an unknown quantity of the antigen is then applied. This forms a quantifiable antibody-antigen complex. EIA (enzyme immuno assay) is a similar technique, except in this case a known concentration of antigen is fixed to the wells, and the quantity of antibody in a titer determined.

To make the ELISA antibody-antigen reaction visible, a detectable marker must be present. Generally, a secondary antibody (AB2) is used, targeted to a specific region of the primary antibody, (AB1). The AB2 is coupled to an enzyme which, in the final part of the process, converts an applied substance to a detectable signal, for example fluorescence or a dye. The intensity of the signal is equal to the amount of antigen present.

As you can see, the nature of the ELISA technique makes it ideal for supplying in kit form. Once the biologist knows the antigen they want targeted, practically any antibody can be supplied in pre-fixed well format.

SuperBUGS and neuronal disease research

August 18th, 2010

Recently, we at Novus Biologicals added a new phospho-MAP1B (phosphorylated microtubule-associated protein 1B) antibody to our antibody database. MAP1B is a developmentally regulated phosphoprotein thought to be involved in the assembly of microtubules, an essential part of neurogenesis.

Gene knockdown antibody studies have shown MAP1B plays an important role in the function and development of the nervous system. It may regulate microtubule function, affecting neuronal differentiation and migration, axon growth and growth-cone function. Mutated MAP1B has been implicated in a range of neural disorders including Fragile X syndrome and giant axonal neuropathy.

Antibody studies have shown MAP1B is phosphorylated by GSK3 beta (glycogen synthase kinase 3beta) at two sites – Thr1265 and Ser1260. Phospho-MAP1B antibody (also – curiously – known as SuperBUGS) detects phosphorylated MAP1B at Thr1265.

Recent studies revealed phosphorylation cannot occur at the GSK3 beta site without pre-phosphorylation at a “primed site” further downstream. Primed GSK-3beta-phosphorylated MAP1B sites are found uniformly throughout the neuron, including the soma and axon. However, there are also a number of non-primed sites, which are only expressed in the axon area. These are arranged in a gradient that is highest towards the distal, or growth-cone end.

At both primed and non-primed GSK-3beta sites, phosphorylated MAP1B occurs in spatially distinctive patterns. Recently, Tymanskyj et al used antibody assay techniques to investigate the evolutionary conservation of MAP1B spatial distribution in embryonic spinal cord sections.

Phospho-MAP1B antibodies raised to both primed and non-primed GSK-3beta sites in a variety of embryonic vertebrates revealed both types were remarkably conserved. However, the lowest degree of conservation occurred in non-primed sites, suggesting these evolved more recently.

Embryonic stem cell markers and the aging process

August 16th, 2010

We at Novus Biologicals recently extended our antibody catalogue to include several embryonic stem cell (ESC) antibodies validated for use in FACS (fluorescent activated cell sorting) assays. Among them was Oct4, which recently became the focus of an interesting study into the human aging process.

ESCs are pluripotent cells with the ability to differentiate into any of the cells of the 3 embryonic germ cell layers. They are crucial to embryonic development. Until recently, it was thought pluripotency was restricted to ESCs, and that adult stem cells (ASCs) could only differentiate into specific cell type subsets (i.e. were multipotent). However, it has now been shown that adult stem cells can redevelop pluripotency when transferred from one ASC environment to another.

Oct 4 is a transcription factor found in ESCs and germ cells, thought to play a crucial role in maintaining and regaining pluripotency of stem cells, as well as regulating germ cell development. Now, researchers at the Thomas Jefferson University have revealed a link between the aging protein WRNp and Oct4 pluripotency.

WRNp is expressed in the autosomal recessive premature aging disorder, Werner syndrome, and is an accepted model for the normal aging process. However, the study revealed that WRNp has a hitherto unknown novel function, in that it also controls Oct4 expression by interacting with the protein Dnmt3b, controlling methylation of DNA at the Oct4 promoter .

DNA methylation causes inactivation of the Oct4 gene, enabling stem cell differentiation (and therefore embryonic development) to take place. This antibody research supports the hypothesis that reduced differentiation of stem cells forms part of the aging process.

Fluorescent markers and FACS assays

August 13th, 2010

As one of Europe’s top antibody suppliers, we at Novus Biologicals are constantly extending our antibody database to take advantage of the latest technology and product developments. Recently, we added several embryonic stem cell marker antibodies, conjugated for use in FACS (fluorescence activated cell sorting) assays.

FACS involves the sorting of heterogeneous cell populations by use of antibodies tagged with fluorescent dyes, targeted to proteins specific to particular cell types. When excited by laser light, the dye fluoresces at a particular wavelength, allowing easy detection and isolation of the relevant cells.

Our antibodies are tagged with a variety of fluorescent labels. This is because different applications have different types of laser. For example, the blue argon laser emits light in the blue/green spectrum at 488 nm. An air-cooled device, it is cheap to set up and run, and the most common laser found on single-laser machines.

Fluorescent dyes react to laser light by first absorbing the light, and then emitting light at a different wavelength to that which has been absorbed. Each dye emits its own wavelength, meaning several proteins can be studied in one sample, by using different tags. Dyes which absorb light at 488 nm and emit in the green spectrum include Alexa Fluor 488 and DyLight 488. Fluors emitting in the red channel include PE-Alexa Fluor 700 and PE-Cy5 (TRI-COLOR) conjugates.

Some dyes, for example PE-Alexa Fluor 750, emit in the infra-red spectrum, though not all FACS machines are equipped for this. There are also red diode and violet lasers, which emit at 635 and 405 nm respectively, and are also used with a variety of fluors of different emission spectra.

Antibodies conjugated to fluorescent dyes are widely used in biological research, providing an infallible method of isolating individual cell populations.

Fluorescence activated cell sorting antibody techniques

August 11th, 2010

Recently, we at Novus Biologicals added several embryonic stem cell marker products to our antibody catalog, validated for use in fluorescent activated cell sorting (FACS) assays. They included Cripto1, PODXL, SSEA, OCT4, Nanog, SOX2, TRA-1, TERT and GPR49/LGR5 antibodies.

FACS is a type of flow cytometry which allows the sorting of a heterogeneous mixture of cells into individual containers, one cell at a time, based upon the fluorescent and light scattering properties of each cell. It is useful characteristics of each cell. It is a useful technique, providing a fast and quantitative recording of individual fluorescent signals, as well as physically separating cells of interest.

The technique is of particular use in stem cell research. When cells are obtained from multicellular organisms, the DNA is naturally identical in each one. However, the proteins of each cell vary widely. Therefore, a method of separating cells based on their phenotype i.e. FACS is extremely useful. In addition, FACS allows us to see what percentage of the total cell population is expressing the protein of interest, and in what quantity.

The process involves the gentle forcing of cells through a fine, vibrating nozzle, one at a time. As the cells flow through, they are scanned by a laser. Some of the light is scattered, and this is used to count the cells. It also serves to measure the size of the cells.

Cell subpopulations can be separated by tagging with an antibody conjugated with a fluorescent dye, targeted to a protein specific to those cells. When excited by the laser, the dye emits a particular wavelength of light, allowing the apparatus to identify and isolate the relevant cells.

Fanconi antibodies and cancer research

August 9th, 2010

We at Novus Biologicals have an extensive antibody database devoted to the 13 Fanconi anaemia complementation (FANC) genes, which are involved in the recognition and repair of damaged DNA.

The core complex of 8 proteins (FANCA, B, C, E, F, G, L and M) are of particular interest to cancer groups, as defects in these proteins are known to cause Fanconi’s anemia, which carries a higher risk of cancer developing. The complex is also associated with the breast cancer susceptibility gene BRCA2. Recently, we extended our antibody catalogue with the addition of several SDIX GAT (Genome Antibody Technology) reagents.

Under normal circumstances, the core complex is activated in response to DNA damage, the trigger being the cessation of replication. The proteins interact with BRCA2 by addition of ubiquitin (ubiquitinisation) which then facilitates repair. Recent studies have been able to look at this process in depth.

It is thought the 8 proteins in the core complex migrate from the cytoplasm to the nucleus following nuclear localization signalling of FANCA and FANCE. Assembly of the complex is activated by replication stress, in particular DNA damage caused by cross-linking agents or oxidative stress caused by ROS (reactive oxygen species). The assembled complex then triggers FANCL, an E3 ubiquitin ligase protein which monoubiquitinates FANCD2. This then interacts with the BRCA1/BRCA2 complex.

It is now known that there are several similar complexes involved in DNA damage recognition and repair activation, which interact with the FA genes. Recently, researchers identified two novel proteins – christened MHF1 and MHF2 – associated with the core protein FANCM. Antibody suppliers like us at Novus Biologicals are constantly revising our catalogues as new discoveries are made.